Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_003970 and ABIE53_003971 are separated by 2 nucleotidesABIE53_003971 and ABIE53_003972 overlap by 1 nucleotidesABIE53_003972 and ABIE53_003973 are separated by 46 nucleotidesABIE53_003973 and ABIE53_003974 are separated by 357 nucleotides ABIE53_003970: ABIE53_003970 - carbon-monoxide dehydrogenase small subunit, at 122,299 to 122,805 _003970 ABIE53_003971: ABIE53_003971 - CO/xanthine dehydrogenase Mo-binding subunit, at 122,808 to 125,123 _003971 ABIE53_003972: ABIE53_003972 - carbon-monoxide dehydrogenase medium subunit, at 125,123 to 126,016 _003972 ABIE53_003973: ABIE53_003973 - 3-oxoadipate enol-lactonase, at 126,063 to 126,899 _003973 ABIE53_003974: ABIE53_003974 - NitT/TauT family transport system permease protein, at 127,257 to 128,048 _003974
Group Condition ABIE53_003970 ABIE53_003971 ABIE53_003972 ABIE53_003973 ABIE53_003974
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.2 -0.3 -4.2 -0.0
plant outgrowth control Plant outgrowth control -1.5 +0.0 +0.7 -4.8 +0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.9 -0.2 +0.3 -4.2 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.1 -0.1 -0.8 -2.0 -0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 -0.5 +0.5 -1.9 -2.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.1 +0.4 -4.3 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.2 -0.5 -1.9 -0.4
stress RCH2_defined_glucose_5mM with Chlorogenic 0.5 mM -1.0 -0.0 -0.0 -2.7 +0.4
carbon source Shikimic Acid 5 mM (C) -0.7 +0.4 -0.7 -2.4 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.9 -0.7 -1.3 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.2 +0.1 -2.6 -0.5
carbon source Shikimic Acid 5 mM (C) -0.7 +0.4 -0.5 -2.5 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -1.2 +0.0 -2.8 +0.0
soil extract Indole-3-pyruvic 5 mM in soil extract +0.1 +0.0 -0.5 -2.4 -0.2
carbon source Adenosine (C) -0.3 -0.1 +0.4 -2.9 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -0.8 +0.1 -2.5 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.2 +0.2 -1.4 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.3 +0.1 -1.3 -0.1
stress R2A with Tricalcium phosphate 0.5 g/L +0.4 +0.3 -0.3 -2.1 -0.5
carbon source D-Glucose (C) +0.0 -0.1 +0.7 -2.5 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.2 -0.4 -2.7 +0.0
carbon source L-Alanine (C) +0.4 -0.2 +0.5 -2.2 -0.1
carbon source Adenosine (C) +0.3 -0.8 +0.4 -1.4 +0.1
carbon source Tween 20 (C) +0.2 -0.6 +1.0 -1.7 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.1 +0.7 -2.3 +0.3
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.2 +0.4 +0.5 -1.6 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -0.3 +0.2 +1.3 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.0 -0.3 +1.8 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.3 +0.7 +1.5 -0.1
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM +0.4 -0.2 +0.3 +1.4 +0.8
remove
ABIE53_003970
plot		 remove
ABIE53_003971
plot		 remove
ABIE53_003972		 remove
ABIE53_003973
plot		 remove
ABIE53_003974
plot