Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003941 and ABIE53_003942 overlap by 4 nucleotidesABIE53_003942 and ABIE53_003943 are separated by 350 nucleotidesABIE53_003943 and ABIE53_003944 are separated by 24 nucleotidesABIE53_003944 and ABIE53_003945 are separated by 68 nucleotides ABIE53_003941: ABIE53_003941 - HAMP domain-containing protein, at 89,343 to 90,263 _003941 ABIE53_003942: ABIE53_003942 - hypothetical protein, at 90,260 to 91,717 _003942 ABIE53_003943: ABIE53_003943 - RNA polymerase sigma-70 factor (ECF subfamily), at 92,068 to 92,598 _003943 ABIE53_003944: ABIE53_003944 - anti-sigma factor RsiW, at 92,623 to 93,609 _003944 ABIE53_003945: ABIE53_003945 - amidase, at 93,678 to 95,123 _003945
Group Condition ABIE53_003941 ABIE53_003942 ABIE53_003943 ABIE53_003944 ABIE53_003945
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.4 -3.6 -0.6 -0.8
plant outgrowth control Plant outgrowth control +1.2 -1.4 -4.3 -0.0 -0.1
stress R2A with Propan-1-ol 13 g/L -0.6 -0.2 -1.3 -2.1 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -0.4 -2.0 -0.4 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.5 -4.0 -0.1 +0.7
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM +0.8 +0.1 -1.7 -2.2 -0.1
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.4 +0.1 -1.0 -2.7 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.4 -2.7 -0.3 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 +0.2 +0.4 -2.1 -0.2
stress M9 with Chloride 200 mM -0.9 -0.5 +0.7 -1.9 -0.2
carbon source Acetylated xylan 10 g/L (C) +0.4 +0.1 -2.2 -0.9 +0.1
stress RCH2_defined_glucose_5mM with Pyridoxal 0.5 mM +0.0 +0.1 +0.6 -2.6 -0.4
carbon source L-Arginine (C) +0.5 -0.2 -2.4 -0.1 +0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 +0.2 +0.3 -1.6 +0.4
carbon source L-Proline (C) +0.4 +0.4 -3.1 +0.0 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 +0.0 -1.5 -1.3 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 +0.1 -1.9 -0.6 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.5 -1.6 -0.4 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 +0.2 +0.8 -1.3 +0.7
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.1 +0.3 +1.4 -3.1 +0.1
stress Growth in presence of pinene +1.3 -0.1 -2.2 -0.3 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.0 -1.7 -0.6 +1.2
stress RCH2_defined_glucose_5mM with Salicylic 5 mM +0.5 +0.2 +0.8 -2.7 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 +0.2 +0.7 -1.5 +0.9
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.3 -0.4 +1.3 -1.4 -0.1
plant outgrowth control Plant outgrowth control +1.5 +0.0 -1.6 -0.4 -0.0
stress R2A with Propan-1-ol 13 g/L -0.9 -0.6 +1.4 -0.6 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 +2.1 -0.2 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 +0.1 +1.6 -0.7 +1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.1 +1.4 +0.7 +0.6
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