Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003917 and ABIE53_003918 are separated by 108 nucleotidesABIE53_003918 and ABIE53_003919 overlap by 4 nucleotidesABIE53_003919 and ABIE53_003920 are separated by 258 nucleotidesABIE53_003920 and ABIE53_003921 are separated by 84 nucleotides ABIE53_003917: ABIE53_003917 - catalase, at 56,917 to 58,005 _003917 ABIE53_003918: ABIE53_003918 - anti-sigma factor RsiW, at 58,114 to 59,100 _003918 ABIE53_003919: ABIE53_003919 - RNA polymerase sigma-70 factor (ECF subfamily), at 59,097 to 59,645 _003919 ABIE53_003920: ABIE53_003920 - type VI secretion system protein ImpA, at 59,904 to 60,986 _003920 ABIE53_003921: ABIE53_003921 - hypothetical protein, at 61,071 to 61,502 _003921
Group Condition ABIE53_003917 ABIE53_003918 ABIE53_003919 ABIE53_003920 ABIE53_003921
nitrogen source histamine 2mM N source -0.3 -1.0 -1.5 -0.5 N.D.
stress M9 with Ethanol 2.5 vol% -0.2 -2.1 +0.0 -0.2 N.D.
stress M9 with Ethanol 2.5 vol% -0.1 -2.0 +0.0 -0.5 N.D.
stress M9 with Ethanol 2.5 vol% +0.2 -2.5 -0.0 +0.1 N.D.
stress M9 with Chloride 200 mM -0.3 -1.0 +0.1 -0.9 N.D.
carbon source Adenosine (C) -0.3 -0.1 -1.2 -0.5 N.D.
carbon source Acetylated xylan 10 g/L (C) -0.7 -1.8 +0.5 -0.0 N.D.
stress M9 with Propan-1-ol 13 g/L -0.1 -1.5 -0.3 -0.2 N.D.
stress M9 with Propan-1-ol 13 g/L -0.1 -2.1 +0.3 -0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.0 +0.3 -0.2 -1.9 N.D.
stress R2A with Chloride 200 mM -0.1 -1.2 -0.6 +0.1 N.D.
stress R2A with Propan-1-ol 13 g/L -0.3 -1.1 +0.3 -0.6 N.D.
stress M9 with Propan-1-ol 13 g/L -0.0 -1.7 +0.3 -0.4 N.D.
stress M9 with Isopropyl alcohol 21 g/L +0.0 -1.3 +0.3 -0.7 N.D.
stress M9 with Propan-1-ol 13 g/L +0.1 -2.1 +0.2 +0.2 N.D.
carbon source Shikimic Acid 5 mM (C) -0.7 -1.2 +0.3 +0.0 N.D.
carbon source Acetylated xylan 10 g/L (C) -0.7 -1.2 +1.2 -0.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -1.0 -0.8 +0.4 N.D.
carbon source Laminarin 10 g/L (C) -0.5 -0.6 +0.7 -0.8 N.D.
stress R2A with Chloride 200 mM +0.1 -1.7 +0.1 +0.5 N.D.
stress M9 with Isopropyl alcohol 21 g/L +0.2 -1.5 +0.5 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 +0.3 +0.3 -1.4 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 +1.1 -0.8 -0.5 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -1.1 +0.2 +0.6 N.D.
r2a outgrowth control R2A outgrowth control -0.1 +0.1 -0.9 +1.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.6 -0.9 +0.3 N.D.
carbon source m-Inositol (C) +0.1 +0.6 +0.6 -0.9 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 +0.5 +1.3 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.7 +0.6 +0.6 N.D.
soil extract Sucrose 5 mM in soil extract -0.1 -0.2 +0.3 +2.5 N.D.
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