Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003888 and ABIE53_003889 overlap by 4 nucleotidesABIE53_003889 and ABIE53_003890 are separated by 16 nucleotidesABIE53_003890 and ABIE53_003891 are separated by 49 nucleotidesABIE53_003891 and ABIE53_003892 are separated by 4 nucleotides ABIE53_003888: ABIE53_003888 - L-fuculose-phosphate aldolase, at 26,897 to 27,568 _003888 ABIE53_003889: ABIE53_003889 - methylthioribose-1-phosphate isomerase, at 27,565 to 28,644 _003889 ABIE53_003890: ABIE53_003890 - 5-methylthioribose kinase, at 28,661 to 29,929 _003890 ABIE53_003891: ABIE53_003891 - DNA-binding GntR family transcriptional regulator, at 29,979 to 30,440 _003891 ABIE53_003892: ABIE53_003892 - DNA-binding FadR family transcriptional regulator, at 30,445 to 30,699 _003892
Group Condition ABIE53_003888 ABIE53_003889 ABIE53_003890 ABIE53_003891 ABIE53_003892
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 -3.7 +0.2 +0.7 N.D.
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.4 -3.2 +0.2 -0.2 N.D.
stress RCH2_defined_glucose_5mM with Chlorogenic 0.5 mM -0.7 -1.8 +0.0 -0.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -1.6 -0.2 -0.5 N.D.
carbon source L-Tryptophan (C) -0.1 -1.3 +0.2 -1.3 N.D.
carbon source Tween 20 (C) -0.9 -1.1 -0.3 +0.7 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 +0.6 +0.2 -0.7 N.D.
r2a outgrowth control R2A outgrowth control +0.9 -1.5 -0.2 -0.4 N.D.
stress M9 with Chloride 200 mM -0.9 +1.1 -0.0 -1.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 -1.5 +0.1 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +1.8 -0.4 +0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.6 -0.5 +1.3 N.D.
carbon source Inosine (C) +1.7 -0.9 +0.4 +1.2 N.D.
carbon source D-Arabinose (C) +1.2 +0.2 -0.1 +1.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.5 -0.0 +1.6 N.D.
carbon source D-Arabinose (C) +1.1 +0.7 +0.5 +1.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.9 -0.2 +2.9 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.1 +1.2 +0.1 +1.1 N.D.
carbon source Adenosine (C) +1.1 +1.0 +0.5 +1.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +1.8 -0.4 +2.4 N.D.
carbon source Inosine (C) +1.5 +0.8 +0.2 +1.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.6 +0.9 -0.5 +1.9 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +2.2 -0.1 +1.7 N.D.
carbon source Adenosine (C) +1.4 +0.6 +0.5 +1.6 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 +1.7 +0.7 +1.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +1.3 +0.0 +3.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +1.4 +0.6 +2.7 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 +1.8 +0.3 +2.2 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.1 +3.5 -0.3 +3.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.6 +2.3 +0.6 +3.3 N.D.
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