Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_003886	ABIE53_003887	ABIE53_003888	ABIE53_003889	ABIE53_003890
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.0	-1.3	-3.7	+0.2
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	N.D.	-0.9	-0.4	-3.2	+0.2
carbon source	L-Tryptophan (C)	N.D.	-1.6	-0.9	-0.6	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	-1.5	+0.5	-1.3	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.5	-0.8	-1.6	-0.2
r2a outgrowth control	R2A outgrowth control	N.D.	-1.1	+0.9	-1.5	-0.2
carbon source	D-Sorbitol (C)	N.D.	+1.3	-1.1	-1.1	-0.3
carbon source	Tween 20 (C)	N.D.	+1.7	-0.9	-1.1	-0.3
carbon source	D-Fructose (C)	N.D.	+1.2	-0.9	-0.7	-0.1
carbon source	Inosine (C)	N.D.	-1.5	+1.7	-0.9	+0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+1.1	+0.7	-1.5	-0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.4	+1.3	-1.5	+0.1
carbon source	L-Histidine (C)	N.D.	+1.7	-0.0	-0.9	-0.3
carbon source	Acetylated xylan 10 g/L (C)	N.D.	+0.6	+1.3	-1.1	-0.3
carbon source	Adenosine (C)	N.D.	-1.7	+1.4	+0.6	+0.5
biofilm	biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound	N.D.	+1.8	+0.2	-1.3	+0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+1.4	-0.4	+0.9	-0.5
biofilm	biofilm; attached cells from 96 well plate assay in R2A	N.D.	+1.5	+0.4	-0.7	+0.2
carbon source	D-Glucose-6-Phosphate (C)	N.D.	+1.9	-0.6	+0.7	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	-0.2	+1.6	+0.9	-0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-0.9	+0.5	+1.8	+0.3
carbon source	L-Proline (C)	N.D.	+1.6	-0.3	+1.0	-0.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.7	-0.0	+1.8	-0.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+1.0	-0.4	+1.0	+0.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+1.0	+1.3	-0.5	+0.4
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	+0.4	+1.1	+1.2	+0.1
carbon source	Inosine (C)	N.D.	+0.6	+1.5	+0.8	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-0.9	+1.1	+3.5	-0.3
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	+0.8	+0.8	+1.7	+0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	+0.5	+1.6	+2.3	+0.6