Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003881 and ABIE53_003882 are separated by 12 nucleotidesABIE53_003882 and ABIE53_003883 are separated by 48 nucleotidesABIE53_003883 and ABIE53_003884 overlap by 4 nucleotidesABIE53_003884 and ABIE53_003885 are separated by 1 nucleotides ABIE53_003881: ABIE53_003881 - dihydroxyacetone kinase-like protein, at 21,427 to 22,053 _003881 ABIE53_003882: ABIE53_003882 - dihydroxyacetone kinase-like protein, at 22,066 to 23,076 _003882 ABIE53_003883: ABIE53_003883 - ribose transport system permease protein, at 23,125 to 24,126 _003883 ABIE53_003884: ABIE53_003884 - ABC-type sugar transport system ATPase subunit, at 24,123 to 24,467 _003884 ABIE53_003885: ABIE53_003885 - ABC-type sugar transport system ATPase subunit, at 24,469 to 25,419 _003885
Group Condition ABIE53_003881 ABIE53_003882 ABIE53_003883 ABIE53_003884 ABIE53_003885
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.6 -0.1 +0.2 -0.1 -0.6
carbon source Acetylated xylan 10 g/L (C) -3.5 -0.4 -0.6 -0.3 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.6 +0.1 +0.4 +0.2 -0.6
carbon source D,L-Malic Acid (C) -4.6 -0.2 +0.1 +0.2 +0.6
soil extract Serotonin 5 mM in soil extract -3.4 -0.2 -0.2 +0.1 -0.1
stress M9 with 3-methyl-3-butenol 4.5 g/L -2.9 -0.1 -0.3 -0.1 -0.2
carbon source Acetylated xylan 10 g/L (C) -3.6 +0.1 +0.0 +0.2 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 -0.3 -0.2 -0.5 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.0 -0.1 -0.0 +0.2 +0.1
carbon source shik 5mM -2.5 -0.2 -0.2 +0.1 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.1 -0.2 -0.7 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 -0.0 -0.0 -0.3 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.2 -0.1 -0.8 +0.2
carbon source m-Inositol (C) -2.5 -0.1 +0.2 +0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.2 -0.0 -0.2 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 -0.2 +0.5 -0.3 +0.2
carbon source D-Galactose (C) -2.2 +0.1 +0.1 +0.5 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.7 +0.3 +0.2 +0.3 +0.2
carbon source Laminarin 10 g/L (C) -1.9 -0.0 -0.1 +0.5 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 -0.6 +0.1 +0.3 +0.2
soil extract Sucrose 5 mM in soil extract -2.0 -0.2 +0.2 +0.3 +0.2
r2a outgrowth control R2A outgrowth control -2.1 +0.1 -0.1 +0.2 +0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 +0.1 +0.0 +0.4 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.2 -0.3 +0.1 -1.2 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.8 -0.3 -0.3 -0.5 -0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.8 +0.8 +0.0 -1.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.9 +0.2 -0.1 -0.6 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +2.5 -0.1 -0.3 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.7 +0.1 +0.2 +0.2 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +2.8 +0.3 -0.1 +0.0 -0.1
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