Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003878 and ABIE53_003879 are separated by 72 nucleotidesABIE53_003879 and ABIE53_003880 overlap by 4 nucleotidesABIE53_003880 and ABIE53_003881 are separated by 257 nucleotidesABIE53_003881 and ABIE53_003882 are separated by 12 nucleotides ABIE53_003878: ABIE53_003878 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 17,595 to 18,596 _003878 ABIE53_003879: ABIE53_003879 - uncharacterized protein YgbK (DUF1537 family), at 18,669 to 20,015 _003879 ABIE53_003880: ABIE53_003880 - 2-keto-3-deoxygluconate permease, at 20,012 to 21,169 _003880 ABIE53_003881: ABIE53_003881 - dihydroxyacetone kinase-like protein, at 21,427 to 22,053 _003881 ABIE53_003882: ABIE53_003882 - dihydroxyacetone kinase-like protein, at 22,066 to 23,076 _003882
Group Condition ABIE53_003878 ABIE53_003879 ABIE53_003880 ABIE53_003881 ABIE53_003882
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 -0.6 +0.2 -4.6 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.6 +0.4 +0.1 -4.6 +0.1
carbon source D,L-Malic Acid (C) -0.4 -0.1 -0.2 -4.6 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.2 +0.2 -0.1 -2.2 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 +0.2 +0.2 -2.7 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.1 +0.2 -0.2 -1.6 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.7 +0.3 -0.3 -2.2 +0.1
stress M9 with 3-methyl-3-butenol 4.5 g/L -1.6 +0.0 -0.1 -2.9 -0.1
stress R2A with Isopropyl alcohol 21 g/L -2.5 -0.2 -0.0 -1.9 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.0 +0.2 -0.4 -1.3 +0.0
carbon source Acetylated xylan 10 g/L (C) -0.8 +0.3 +0.1 -3.5 -0.4
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 +0.0 +0.1 -1.9 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.7 -0.6 -0.0 -1.7 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 -0.2 -0.0 -1.8 -0.3
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut -2.5 +0.4 -0.2 -1.9 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 +0.0 +0.1 -2.1 -0.3
carbon source Acetylated xylan 10 g/L (C) -0.7 +0.1 +0.3 -3.6 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 +0.8 -0.0 -3.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.0 +0.2 +0.2 -1.0 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.8 +0.2 -0.1 -0.9 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 -0.1 -0.3 +0.4 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.5 +0.7 +0.2 -0.8 -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.6 -0.8 -0.2 +1.1 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 -0.1 +0.3 +0.9 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 -0.4 -0.2 +1.8 -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.5 +0.3 +0.1 +0.6 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 +0.2 +0.0 +1.7 +0.1
stress Growth in presence of pinene -2.1 +0.2 +0.2 +1.9 -0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.7 -0.2 +0.5 +1.9 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 -0.3 +0.2 +2.8 +0.3
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ABIE53_003878
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ABIE53_003879
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ABIE53_003882
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