Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003874 and ABIE53_003875 are separated by 610 nucleotidesABIE53_003875 and ABIE53_003876 are separated by 572 nucleotidesABIE53_003876 and ABIE53_003877 are separated by 133 nucleotidesABIE53_003877 and ABIE53_003878 are separated by 78 nucleotides ABIE53_003874: ABIE53_003874 - 2-aminoethylphosphonate transport system substrate-binding protein, at 13,169 to 14,257 _003874 ABIE53_003875: ABIE53_003875 - DeoR family glycerol-3-phosphate regulon repressor, at 14,868 to 15,623 _003875 ABIE53_003876: ABIE53_003876 - hypothetical protein, at 16,196 to 16,546 _003876 ABIE53_003877: ABIE53_003877 - DeoR/GlpR family transcriptional regulator of sugar metabolism, at 16,680 to 17,516 _003877 ABIE53_003878: ABIE53_003878 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 17,595 to 18,596 _003878
Group Condition ABIE53_003874 ABIE53_003875 ABIE53_003876 ABIE53_003877 ABIE53_003878
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -0.1 -3.2 -0.2 -1.9 -1.5
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -0.1 -4.4 -0.5 -1.8 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.1 -0.6 -3.3 -2.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.0 +0.4 -3.4 -2.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.6 +0.0 -3.5 -3.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.6 -0.3 -3.3 -2.8
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.1 -2.0 -0.7 -2.8 +0.6
carbon source shik 20mM +0.1 +0.2 -0.4 -2.8 -2.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.0 -0.8 -2.0 -2.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.3 +0.1 -2.8 -2.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.5 -0.4 -1.3 -2.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +1.4 -0.7 -3.5 -2.6
soil extract Indole-3-pyruvic 5 mM in soil extract +0.3 -1.2 -1.2 -2.1 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.7 -0.4 -1.8 -3.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.4 -1.2 -1.0 -2.6
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 +0.4 -0.1 -1.8 -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.4 -0.7 -2.5 -1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.5 -0.8 -0.3 -3.1
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.1 -2.1 +0.3 -2.0 +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 +1.6 -0.2 -2.8 -2.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.8 -0.1 -0.7 -3.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.9 -0.2 -2.6 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.6 +0.1 -1.9 -2.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.8 -0.1 -2.3 -1.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 +0.9 +0.1 -1.3 -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.6 +0.3 +0.5 -1.3 -2.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 +0.9 +0.2 -2.3 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.6 +0.4 -1.0 -2.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.5 +1.1 -0.1 -2.3 -1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 +0.5 +2.2 -2.5
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ABIE53_003874
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