Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_003679 and ABIE53_003680 are separated by 180 nucleotidesABIE53_003680 and ABIE53_003862 are separated by 224 nucleotidesABIE53_003862 and ABIE53_003681 are separated by 19 nucleotidesABIE53_003681 and ABIE53_003682 are separated by 70 nucleotides ABIE53_003679: ABIE53_003679 - putative flavoprotein (TIGR03862 family), at 4,135,341 to 4,136,633 _003679 ABIE53_003680: ABIE53_003680 - methylase of polypeptide subunit release factors, at 4,136,814 to 4,137,941 _003680 ABIE53_003862: ABIE53_003862 - tRNA-Thr, at 4,138,166 to 4,138,241 _003862 ABIE53_003681: ABIE53_003681 - stringent starvation protein B, at 4,138,261 to 4,138,800 _003681 ABIE53_003682: ABIE53_003682 - RNA polymerase-associated protein, at 4,138,871 to 4,139,482 _003682
Group Condition ABIE53_003679 ABIE53_003680 ABIE53_003862 ABIE53_003681 ABIE53_003682
carbon source D-Lactate (C) +0.4 +0.4 N.D. -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 +0.3 N.D. +0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.1 N.D. +0.5 N.D.
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound +0.8 -0.1 N.D. +0.4 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.1 N.D. +0.4 N.D.
carbon source D-Galacturonic Acid (C) +0.4 +0.2 N.D. +0.6 N.D.
carbon source D-Galactose (C) +0.7 -0.0 N.D. +0.6 N.D.
stress M9 with 3-methyl-2-butenol 2 g/L +0.3 +0.1 N.D. +0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.2 N.D. +0.5 N.D.
carbon source D-Gluconic Acid (C) +0.5 +0.2 N.D. +0.6 N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.2 +0.2 N.D. +0.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.2 N.D. +0.4 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.6 -0.0 N.D. +0.7 N.D.
carbon source L-Glutamine (C) +0.7 +0.2 N.D. +0.4 N.D.
carbon source L-Rhamnose (C) +0.7 +0.0 N.D. +0.6 N.D.
stress RCH2_defined_glucose_5mM with Adenine 5 mM +0.3 +0.2 N.D. +0.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.1 N.D. +0.9 N.D.
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM +0.1 +0.4 N.D. +0.9 N.D.
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.2 +0.3 N.D. +0.9 N.D.
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.5 +0.1 N.D. +0.9 N.D.
carbon source D-Galacturonic Acid (C) +0.8 +0.0 N.D. +0.7 N.D.
carbon source D-Glucose (C) +0.6 +0.0 N.D. +0.9 N.D.
carbon source D-Glucuronic Acid (C) +0.7 +0.3 N.D. +0.6 N.D.
carbon source Tween 20 (C) +0.6 -0.1 N.D. +1.1 N.D.
carbon source D-Sorbitol (C) +0.6 +0.2 N.D. +0.9 N.D.
carbon source D-Fructose (C) +0.7 +0.2 N.D. +0.9 N.D.
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM +0.2 +0.6 N.D. +1.1 N.D.
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.3 +0.5 N.D. +1.1 N.D.
carbon source Tween 20 (C) +0.8 +0.3 N.D. +1.0 N.D.
carbon source L-Histidine (C) +0.6 +0.4 N.D. +1.1 N.D.
remove
ABIE53_003679
plot		 remove
ABIE53_003680
plot		 remove
ABIE53_003862		 remove
ABIE53_003681
plot		 remove
ABIE53_003682
plot