Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003022 and ABIE53_003023 are separated by 186 nucleotidesABIE53_003023 and ABIE53_003842 are separated by 159 nucleotidesABIE53_003842 and ABIE53_003843 are separated by 99 nucleotidesABIE53_003843 and ABIE53_003844 are separated by 81 nucleotides ABIE53_003022: ABIE53_003022 - diguanylate cyclase (GGDEF)-like protein, at 3,418,719 to 3,419,699 _003022 ABIE53_003023: ABIE53_003023 - uncharacterized protein YbaP (TraB family), at 3,419,886 to 3,420,644 _003023 ABIE53_003842: ABIE53_003842 - tRNA-Cys, at 3,420,804 to 3,420,877 _003842 ABIE53_003843: ABIE53_003843 - tRNA-Gly, at 3,420,977 to 3,421,052 _003843 ABIE53_003844: ABIE53_003844 - tRNA-Gly, at 3,421,134 to 3,421,209 _003844
Group Condition ABIE53_003022 ABIE53_003023 ABIE53_003842 ABIE53_003843 ABIE53_003844
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.7 N.D. -3.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.4 N.D. -3.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.1 N.D. -3.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.4 N.D. -2.9 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -0.4 N.D. -2.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.4 N.D. -3.5 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.4 N.D. -3.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.2 N.D. -3.2 N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 -0.6 N.D. -2.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.6 N.D. -2.7 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.1 N.D. -2.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 -0.5 N.D. -1.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.4 N.D. -3.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.3 N.D. -2.6 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.5 N.D. -1.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.1 N.D. -2.4 N.D.
carbon source L-Alanine (C) +0.1 -0.3 N.D. -2.0 N.D.
motility_chemotaxis Motility_chemotaxis, R2A; outer cut +0.2 +0.2 N.D. -2.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.2 N.D. -2.4 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.8 N.D. -1.7 N.D.
carbon source Uridine (C) +0.1 +0.3 N.D. -2.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.3 N.D. -1.9 N.D.
carbon source L-Tryptophan (C) +0.2 +0.2 N.D. -1.9 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.2 N.D. -2.1 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.1 N.D. -1.7 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.5 N.D. -1.5 N.D.
r2a outgrowth control R2A outgrowth control +0.3 -0.2 N.D. +2.3 N.D.
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.2 +0.3 N.D. +1.8 N.D.
plant outgrowth control Plant outgrowth control +0.1 -0.3 N.D. +3.1 N.D.
plant outgrowth control Plant outgrowth control +0.2 -0.5 N.D. +4.1 N.D.
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ABIE53_003022
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ABIE53_003023
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