Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002971 and ABIE53_002972 are separated by 213 nucleotidesABIE53_002972 and ABIE53_003839 are separated by 192 nucleotidesABIE53_003839 and ABIE53_002973 are separated by 70 nucleotidesABIE53_002973 and ABIE53_002974 are separated by 588 nucleotides ABIE53_002971: ABIE53_002971 - cytochrome c peroxidase, at 3,363,152 to 3,364,582 _002971 ABIE53_002972: ABIE53_002972 - acid phosphatase, at 3,364,796 to 3,366,373 _002972 ABIE53_003839: ABIE53_003839 - tRNA-Arg, at 3,366,566 to 3,366,642 _003839 ABIE53_002973: ABIE53_002973 - undecaprenyl-diphosphatase, at 3,366,713 to 3,367,543 _002973 ABIE53_002974: ABIE53_002974 - galactose mutarotase-like enzyme, at 3,368,132 to 3,369,040 _002974
Group Condition ABIE53_002971 ABIE53_002972 ABIE53_003839 ABIE53_002973 ABIE53_002974
carbon source Citric Acid (C) -0.2 +0.1 N.D. -4.4 +0.1
carbon source Citric Acid 20 mM (C) -0.3 -0.2 N.D. -3.9 +0.2
carbon source Citric Acid 20 mM (C) -0.3 +0.0 N.D. -4.0 +0.5
carbon source Citric Acid (C) -0.1 +0.1 N.D. -3.3 -0.0
carbon source Glucuronamide (C) +0.1 -0.2 N.D. -0.5 -2.0
carbon source Glucuronamide (C) +0.1 -0.1 N.D. -0.0 -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 +0.0 N.D. -1.7 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 +0.2 N.D. -1.8 -0.4
carbon source D-Galacturonic Acid (C) -0.5 -0.3 N.D. +0.1 -1.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -0.4 N.D. -0.6 -0.6
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.3 -0.1 N.D. -0.6 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.0 -0.1 N.D. -1.7 +0.3
carbon source D-Sorbitol (C) -0.3 -0.2 N.D. +0.0 -1.0
carbon source D-Galacturonic Acid (C) -0.1 -0.0 N.D. +0.2 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.1 N.D. -0.2 -0.6
carbon source D-Glucosamine Hydrochloride (C) +0.1 -0.6 N.D. -0.0 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 +0.3 N.D. -0.7 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.2 N.D. -0.3 -0.2
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM -0.3 +0.2 N.D. -0.8 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.3 N.D. -0.7 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.2 N.D. -0.8 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.2 N.D. -0.4 +0.3
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.3 +0.3 N.D. -0.4 +0.2
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.2 N.D. +0.6 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 +0.3 N.D. -0.3 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.1 N.D. +0.9 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.5 N.D. +0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.2 N.D. +0.6 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.1 N.D. +0.7 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.0 N.D. +1.0 +0.2
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