Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003740 and ABIE53_003741 overlap by 1 nucleotidesABIE53_003741 and ABIE53_003742 are separated by 106 nucleotidesABIE53_003742 and ABIE53_003743 overlap by 1 nucleotidesABIE53_003743 and ABIE53_003744 overlap by 4 nucleotides ABIE53_003740: ABIE53_003740 - 3-dehydroquinate synthase, at 4,192,138 to 4,193,223 _003740 ABIE53_003741: ABIE53_003741 - shikimate kinase, at 4,193,223 to 4,193,774 _003741 ABIE53_003742: ABIE53_003742 - type IV pilus assembly protein PilQ, at 4,193,881 to 4,195,626 _003742 ABIE53_003743: ABIE53_003743 - Tfp pilus assembly protein PilO, at 4,195,626 to 4,196,561 _003743 ABIE53_003744: ABIE53_003744 - Tfp pilus assembly protein PilN, at 4,196,558 to 4,197,298 _003744
Group Condition ABIE53_003740 ABIE53_003741 ABIE53_003742 ABIE53_003743 ABIE53_003744
soil extract Shikimic Acid 5 mM in soil extract N.D. N.D. -0.4 -0.6 -1.1
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. N.D. -0.2 -0.9 -0.6
soil extract Shikimic Acid 5 mM in soil extract N.D. N.D. -0.3 -0.4 -1.0
carbon source Shikimic Acid 5 mM (C) N.D. N.D. -0.8 -0.2 -0.6
carbon source shik 5mM N.D. N.D. -0.4 -0.4 -0.6
carbon source shik 20mM N.D. N.D. -0.2 -0.3 -0.8
carbon source Uridine (C) N.D. N.D. +0.3 -0.6 -0.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. -0.1 -0.9 +0.2
carbon source D-Glucose-6-Phosphate (C) N.D. N.D. +0.2 -1.0 +0.1
r2a outgrowth control R2A outgrowth control N.D. N.D. +0.0 -1.1 +0.4
motility_chemotaxis Motility_chemotaxis, R2A; outer cut N.D. N.D. +0.4 -1.0 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.2 +0.4 -0.7
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut N.D. N.D. +0.4 -0.9 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.2 -0.8 +0.6
carbon source D-Mannose (C) N.D. N.D. +0.5 -0.3 -0.5
carbon source Trisodium citrate (C) N.D. N.D. +0.1 +0.6 -0.6
plant outgrowth control Plant outgrowth control N.D. N.D. +0.3 -0.7 +0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.3 -0.5 +0.5
carbon source L-Tryptophan (C) N.D. N.D. -0.4 +0.9 -0.0
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. N.D. +0.1 +1.1 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. +0.6 -0.3 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.8 +0.5 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.6 +0.4 +0.2
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.8 +0.6 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.3 +0.0 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.3 +0.1 +1.1
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. +0.2 +0.8 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.5 +0.3 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.3 +0.8 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. +0.9 +1.1 +0.5
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