Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003728 and ABIE53_003729 are separated by 394 nucleotidesABIE53_003729 and ABIE53_003730 are separated by 417 nucleotidesABIE53_003730 and ABIE53_003731 are separated by 68 nucleotidesABIE53_003731 and ABIE53_003732 are separated by 185 nucleotides ABIE53_003728: ABIE53_003728 - signal transduction histidine kinase, at 4,176,485 to 4,177,267 _003728 ABIE53_003729: ABIE53_003729 - protein-tyrosine phosphatase, at 4,177,662 to 4,178,546 _003729 ABIE53_003730: ABIE53_003730 - MFS family permease, at 4,178,964 to 4,180,223 _003730 ABIE53_003731: ABIE53_003731 - D-amino-acid dehydrogenase, at 4,180,292 to 4,181,557 _003731 ABIE53_003732: ABIE53_003732 - glutamate synthase (NADPH/NADH) small chain, at 4,181,743 to 4,183,212 _003732
Group Condition ABIE53_003728 ABIE53_003729 ABIE53_003730 ABIE53_003731 ABIE53_003732
carbon source D-Alanine (C) -4.2 +0.1 +0.1 +0.1 N.D.
nitrogen source histamine 2mM N source -4.1 -0.0 +0.3 -0.0 N.D.
carbon source D-Lactate (C) -3.2 -0.6 +0.2 +0.2 N.D.
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -4.4 +0.4 +0.2 +0.5 N.D.
carbon source D-Trehalose (C) -2.9 -0.0 -0.0 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.7 +0.1 +0.1 +0.1 N.D.
carbon source Uridine (C) -2.1 +0.3 +0.2 -0.2 N.D.
carbon source D-Glucose-6-Phosphate (C) -1.8 +0.1 +0.2 +0.3 N.D.
stress M9 with Chloride 200 mM -1.8 +0.3 -0.0 +0.3 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.8 -0.1 -0.5 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.9 +0.7 +0.7 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.9 -0.6 +0.2 -0.3 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract +0.9 +0.4 +0.7 -0.3 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.4 +0.2 +0.4 -0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 +0.2 +0.8 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.7 +0.4 +0.5 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +2.3 -0.2 +0.1 -0.1 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +2.5 -0.2 +0.0 -0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.5 +0.7 +0.2 +0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.7 +0.1 +0.5 +0.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.4 +0.4 +0.5 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.7 +0.2 +0.4 +0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +2.0 +0.3 +0.1 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.6 +0.3 +0.6 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +2.4 +0.3 +0.2 -0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +2.0 +0.2 +0.5 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +2.2 +0.1 +0.8 +0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +2.0 +0.4 +0.6 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +3.1 +0.4 +1.2 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +3.7 +0.2 +0.9 -0.1 N.D.
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