Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003697 and ABIE53_003698 overlap by 4 nucleotidesABIE53_003698 and ABIE53_003699 are separated by 51 nucleotidesABIE53_003699 and ABIE53_003700 are separated by 85 nucleotidesABIE53_003700 and ABIE53_003701 are separated by 200 nucleotides ABIE53_003697: ABIE53_003697 - glutamine amidotransferase, at 4,150,431 to 4,151,072 _003697 ABIE53_003698: ABIE53_003698 - multiple antibiotic resistance protein, at 4,151,069 to 4,151,689 _003698 ABIE53_003699: ABIE53_003699 - imidazoleglycerol-phosphate dehydratase, at 4,151,741 to 4,152,328 _003699 ABIE53_003700: ABIE53_003700 - histidinol-phosphate aminotransferase, at 4,152,414 to 4,153,484 _003700 ABIE53_003701: ABIE53_003701 - histidinol dehydrogenase, at 4,153,685 to 4,155,007 _003701
Group Condition ABIE53_003697 ABIE53_003698 ABIE53_003699 ABIE53_003700 ABIE53_003701
carbon source D-Lactate (C) N.D. -1.6 N.D. +0.3 N.D.
carbon source D-Lactate (C) N.D. -1.1 N.D. -0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.9 N.D. -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.4 N.D. -0.7 N.D.
carbon source Glycerol (C) N.D. -0.8 N.D. +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.5 N.D. -1.1 N.D.
carbon source Glycerol (C) N.D. -0.7 N.D. +0.1 N.D.
carbon source L-Rhamnose (C) N.D. -0.7 N.D. +0.2 N.D.
carbon source D-Mannose (C) N.D. -0.7 N.D. +0.3 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.4 N.D. -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.2 N.D. +0.6 N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM N.D. +0.7 N.D. -0.2 N.D.
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. +0.8 N.D. -0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.7 N.D. +0.2 N.D.
phage Burk1_100 N.D. +0.6 N.D. +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.6 N.D. +0.3 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.5 N.D. +0.3 N.D.
plant outgrowth control Plant outgrowth control N.D. +0.5 N.D. +0.4 N.D.
plant outgrowth control Plant outgrowth control N.D. +0.7 N.D. +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.6 N.D. +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.6 N.D. +0.4 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. +0.7 N.D. +0.3 N.D.
carbon source Shikimic Acid 5 mM (C) N.D. +0.9 N.D. +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.6 N.D. +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.6 N.D. +0.5 N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM N.D. +1.1 N.D. +0.1 N.D.
carbon source Acetylated xylan 10 g/L (C) N.D. +1.0 N.D. +0.3 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. +0.9 N.D. +0.5 N.D.
plant outgrowth control Plant outgrowth control N.D. +0.9 N.D. +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.8 N.D. +0.9 N.D.
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