Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003690 and ABIE53_003691 are separated by 275 nucleotidesABIE53_003691 and ABIE53_003692 are separated by 90 nucleotidesABIE53_003692 and ABIE53_003693 are separated by 121 nucleotidesABIE53_003693 and ABIE53_003694 overlap by 4 nucleotides ABIE53_003690: ABIE53_003690 - sec-independent protein translocase protein TatA, at 4,146,093 to 4,146,335 _003690 ABIE53_003691: ABIE53_003691 - histidine triad (HIT) family protein, at 4,146,611 to 4,146,976 _003691 ABIE53_003692: ABIE53_003692 - putative membrane protein, at 4,147,067 to 4,147,462 _003692 ABIE53_003693: ABIE53_003693 - phosphoribosyl-ATP pyrophosphohydrolase, at 4,147,584 to 4,147,976 _003693 ABIE53_003694: ABIE53_003694 - phosphoribosyl-AMP cyclohydrolase, at 4,147,973 to 4,148,383 _003694
Group Condition ABIE53_003690 ABIE53_003691 ABIE53_003692 ABIE53_003693 ABIE53_003694
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. -0.1 -0.9 N.D. N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. -0.1 -0.9 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.8 -0.1 N.D. N.D.
motility_chemotaxis Motility_chemotaxis, R2A; outer cut N.D. -0.6 -0.2 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.8 +0.0 N.D. N.D.
motility_chemotaxis Motility_chemotaxis, R2A; outer cut N.D. -0.7 -0.0 N.D. N.D.
stress RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM N.D. -0.5 -0.1 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) N.D. -0.7 +0.1 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.5 -0.1 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.5 +0.1 N.D. N.D.
stress R2A with Chloride 200 mM N.D. -0.5 +0.1 N.D. N.D.
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM N.D. -0.5 +0.2 N.D. N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.5 +0.3 N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. +0.4 -0.3 N.D. N.D.
carbon source D-Fructose (C) N.D. +0.5 +0.2 N.D. N.D.
carbon source D-Glucuronic Acid (C) N.D. +0.5 +0.2 N.D. N.D.
carbon source D-Mannose (C) N.D. +0.5 +0.2 N.D. N.D.
carbon source D-Galacturonic Acid (C) N.D. +0.5 +0.2 N.D. N.D.
r2a no shaking R2A no shaking N.D. +0.6 +0.1 N.D. N.D.
carbon source L-Histidine (C) N.D. +0.4 +0.4 N.D. N.D.
carbon source D-Glucuronic Acid (C) N.D. +0.5 +0.2 N.D. N.D.
carbon source D-Galacturonic Acid (C) N.D. +0.6 +0.1 N.D. N.D.
carbon source D,L-Malic Acid (C) N.D. +0.6 +0.2 N.D. N.D.
r2a no shaking R2A no shaking N.D. +0.7 +0.1 N.D. N.D.
biofilm biofilm; attached cells from 96 well plate assay in R2A N.D. +0.8 +0.0 N.D. N.D.
biofilm biofilm; attached cells from 96 well plate assay in R2A N.D. +0.8 +0.2 N.D. N.D.
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound N.D. +1.0 +0.0 N.D. N.D.
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound N.D. +0.9 +0.1 N.D. N.D.
biofilm biofilm; planktonic cells from 96 well plate assay in R2A N.D. +1.0 +0.0 N.D. N.D.
biofilm biofilm; planktonic cells from 96 well plate assay in R2A N.D. +1.1 +0.1 N.D. N.D.
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