Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003683 and ABIE53_003684 are separated by 23 nucleotidesABIE53_003684 and ABIE53_003685 overlap by 1 nucleotidesABIE53_003685 and ABIE53_003686 are separated by 194 nucleotidesABIE53_003686 and ABIE53_003687 are separated by 19 nucleotides ABIE53_003683: ABIE53_003683 - ubiquinol-cytochrome c reductase cytochrome c1 subunit, at 4,139,579 to 4,140,334 _003683 ABIE53_003684: ABIE53_003684 - ubiquinol-cytochrome c reductase cytochrome b subunit, at 4,140,358 to 4,141,737 _003684 ABIE53_003685: ABIE53_003685 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 4,141,737 to 4,142,393 _003685 ABIE53_003686: ABIE53_003686 - dinuclear metal center YbgI/SA1388 family protein, at 4,142,588 to 4,143,334 _003686 ABIE53_003687: ABIE53_003687 - serine protease DegQ, at 4,143,354 to 4,144,568 _003687
Group Condition ABIE53_003683 ABIE53_003684 ABIE53_003685 ABIE53_003686 ABIE53_003687
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.5 -3.8 -3.8 +0.4 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.9 -3.4 -3.6 +0.2 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 -1.1 -1.6 -0.0 -4.6
carbon source D-Lactate (C) -2.5 -2.7 -2.6 +0.7 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -1.2 -1.1 -0.3 -4.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.8 -0.9 -0.3 -4.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.7 -0.6 -0.3 -5.0
carbon source D-Lactate (C) -2.0 -2.5 -2.8 +0.3 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 -1.4 -2.0 +0.1 -2.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -1.1 -1.6 -0.0 -2.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -1.2 -1.3 -0.1 -3.2
carbon source Beta-Lactose (C) -2.1 -2.1 -2.1 +0.3 -0.6
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -1.3 -0.7 -0.8 +0.0 -3.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.9 -1.3 -0.2 -3.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.8 -1.0 -0.4 -3.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.9 -1.3 -1.6 -1.0 -1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -1.6 -1.0 -0.8 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.9 -1.2 -0.1 -2.7
stress R2A with Propan-1-ol 13 g/L -1.3 -1.2 -1.1 +0.0 -2.0
carbon source Cinnamic and Ethanols -1.4 -1.4 -1.2 +0.2 -1.6
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -1.2 -0.6 -0.4 +0.4 -3.5
carbon source Cinnamic and Ethanols -1.3 -1.4 -1.2 +0.2 -1.7
carbon source Azelaic 20 mM (C) -0.6 -1.2 -1.5 +0.5 -2.5
stress R2A with Propan-1-ol 13 g/L -1.2 -1.2 -1.3 +0.3 -1.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.8 -1.7 -1.2 -0.1 -1.5
carbon source Azelaic 20 mM (C) -0.6 -1.1 -1.3 +0.2 -2.5
stress RCH2_defined_glucose_5mM with Salicylic 5 mM -0.9 -0.5 -0.7 +0.2 -3.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -1.4 -1.2 +0.2 -1.7
carbon source homovanillyl alcohol and Ethanols -1.4 -1.3 -1.4 +0.2 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -1.7 -1.7 -0.3 +0.4
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