Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003677 and ABIE53_003678 are separated by 151 nucleotidesABIE53_003678 and ABIE53_003679 are separated by 413 nucleotidesABIE53_003679 and ABIE53_003680 are separated by 180 nucleotidesABIE53_003680 and ABIE53_003862 are separated by 224 nucleotides ABIE53_003677: ABIE53_003677 - hypothetical protein, at 4,134,246 to 4,134,566 _003677 ABIE53_003678: ABIE53_003678 - putative small metal-binding protein, at 4,134,718 to 4,134,927 _003678 ABIE53_003679: ABIE53_003679 - putative flavoprotein (TIGR03862 family), at 4,135,341 to 4,136,633 _003679 ABIE53_003680: ABIE53_003680 - methylase of polypeptide subunit release factors, at 4,136,814 to 4,137,941 _003680 ABIE53_003862: ABIE53_003862 - tRNA-Thr, at 4,138,166 to 4,138,241 _003862
Group Condition ABIE53_003677 ABIE53_003678 ABIE53_003679 ABIE53_003680 ABIE53_003862
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -2.2 -0.1 -0.3 N.D.
soil extract Serotonin 5 mM in soil extract N.D. -1.9 -0.0 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.3 +0.1 +0.3 N.D.
carbon source Glucuronamide (C) N.D. -1.8 -0.0 +0.1 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.8 +0.2 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.0 +0.5 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.4 -0.0 +0.3 N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM N.D. -1.4 +0.2 +0.2 N.D.
plant outgrowth control Plant outgrowth control N.D. -1.1 +0.3 +0.0 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -1.4 +0.4 +0.2 N.D.
carbon source L-Alanine (C) N.D. -1.2 +0.2 +0.3 N.D.
phage Burk1_10 N.D. -1.2 +0.2 +0.3 N.D.
biofilm biofilm; planktonic cells from 96 well plate assay in R2A N.D. -1.1 +0.6 -0.0 N.D.
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound N.D. -1.1 +0.8 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.7 +0.8 -0.3 N.D.
carbon source L-Proline (C) N.D. -0.7 +0.7 +0.1 N.D.
carbon source Tween 20 (C) N.D. -0.9 +0.8 +0.3 N.D.
carbon source D-Mannose (C) N.D. -0.9 +0.8 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.8 +0.3 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +1.2 +0.4 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.8 +0.6 -0.1 N.D.
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 N.D. +1.1 +0.1 +0.3 N.D.
stress RCH2_defined_glucose_5mM with Serotonin 5 mM N.D. +0.7 +0.3 +0.5 N.D.
stress RCH2_defined_glucose_5mM with Lumichrome 5 mM N.D. +1.0 +0.2 +0.3 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +1.1 +0.3 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.9 +0.6 +0.1 N.D.
r2a outgrowth control R2A outgrowth control N.D. +0.9 +0.5 +0.2 N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM N.D. +0.8 +0.3 +0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +1.5 +0.3 +0.1 N.D.
carbon source L-Histidine (C) N.D. +1.0 +0.6 +0.4 N.D.
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