Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003663 and ABIE53_003664 are separated by 6 nucleotidesABIE53_003664 and ABIE53_003665 are separated by 157 nucleotidesABIE53_003665 and ABIE53_003666 are separated by 40 nucleotidesABIE53_003666 and ABIE53_003667 are separated by 134 nucleotides ABIE53_003663: ABIE53_003663 - peptide chain release factor 1, at 4,120,004 to 4,121,086 _003663 ABIE53_003664: ABIE53_003664 - release factor glutamine methyltransferase, at 4,121,093 to 4,121,962 _003664 ABIE53_003665: ABIE53_003665 - monothiol glutaredoxin, at 4,122,120 to 4,122,431 _003665 ABIE53_003666: ABIE53_003666 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 4,122,472 to 4,123,074 _003666 ABIE53_003667: ABIE53_003667 - 4,5-DOPA dioxygenase extradiol, at 4,123,209 to 4,123,994 _003667
Group Condition ABIE53_003663 ABIE53_003664 ABIE53_003665 ABIE53_003666 ABIE53_003667
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.4 -0.9 -4.1 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.1 -2.7 -3.9 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.7 -1.6 -3.4 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.0 -2.2 -4.0 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.0 -0.7 -3.0 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.7 -1.0 -3.3 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.5 -1.3 -2.5 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.8 -1.8 -2.4 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.9 -1.8 -2.2 -0.4
carbon source Acetylated xylan 10 g/L (C) N.D. -2.3 -2.9 +0.0 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.0 -1.6 -2.7 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.8 -1.2 -0.8 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.7 +0.0 -3.0 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -3.3 -0.9 -0.4 +0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.2 -1.6 -2.5 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -2.1 -0.7 -1.7 +0.2
carbon source Acetylated xylan 10 g/L (C) N.D. -1.5 -2.3 +0.1 -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.9 -1.4 -1.7 +0.2
carbon source D-Lactate (C) N.D. -0.3 -2.5 -1.0 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.2 -0.8 -1.1 +0.6
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM N.D. -1.9 -1.3 -0.5 +0.3
soil extract Adenine 5 mM in soil extract N.D. +1.4 -1.8 -1.0 -0.1
stress RCH2_defined_glucose_5mM with Adenine 2 mM N.D. +2.3 -0.9 -0.5 -0.2
stress RCH2_defined_glucose_5mM with Adenine 4 mM N.D. +4.8 -2.7 -1.0 -0.0
stress RCH2_defined_glucose_5mM with Lumazine 5 mM N.D. +2.7 -0.8 -0.8 -0.0
stress RCH2_defined_glucose_5mM with Adenine 2 mM N.D. +2.7 -0.8 -0.4 -0.3
stress RCH2_defined_glucose_5mM with Lumazine 5 mM N.D. +2.7 -0.7 -0.7 +0.0
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. +5.0 -2.4 -1.0 -0.2
stress RCH2_defined_glucose_5mM with Adenine 4 mM N.D. +5.0 -2.1 -1.1 -0.4
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. +5.3 -2.5 -1.1 -0.1
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