Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003660 and ABIE53_003661 are separated by 199 nucleotidesABIE53_003661 and ABIE53_003662 are separated by 88 nucleotidesABIE53_003662 and ABIE53_003663 are separated by 128 nucleotidesABIE53_003663 and ABIE53_003664 are separated by 6 nucleotides ABIE53_003660: ABIE53_003660 - hypothetical protein, at 4,117,309 to 4,117,590 _003660 ABIE53_003661: ABIE53_003661 - two-component system OmpR family response regulator, at 4,117,790 to 4,118,500 _003661 ABIE53_003662: ABIE53_003662 - glutamyl-tRNA reductase, at 4,118,589 to 4,119,875 _003662 ABIE53_003663: ABIE53_003663 - peptide chain release factor 1, at 4,120,004 to 4,121,086 _003663 ABIE53_003664: ABIE53_003664 - release factor glutamine methyltransferase, at 4,121,093 to 4,121,962 _003664
Group Condition ABIE53_003660 ABIE53_003661 ABIE53_003662 ABIE53_003663 ABIE53_003664
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.0 N.D. N.D. -3.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 +0.4 N.D. N.D. -2.5
stress Growth in presence of pinene -2.3 -0.3 N.D. N.D. -0.8
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -1.5 +0.1 N.D. N.D. -1.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.0 +0.5 N.D. N.D. -2.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.1 N.D. N.D. -3.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 +0.1 N.D. N.D. -2.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 +0.1 N.D. N.D. -2.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.1 N.D. N.D. -2.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 +0.5 N.D. N.D. -1.2
carbon source L-Rhamnose (C) +1.0 +0.1 N.D. N.D. -2.9
carbon source L-Threonine (C) +1.1 -0.1 N.D. N.D. -2.6
carbon source Acetylated xylan 10 g/L (C) +0.3 +0.6 N.D. N.D. -2.3
carbon source Shikimic Acid 5 mM (C) +0.6 +0.5 N.D. N.D. -2.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 +0.1 N.D. N.D. -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.3 N.D. N.D. -2.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +0.3 N.D. N.D. -2.2
carbon source L-Lactate (C) +1.2 -0.4 N.D. N.D. -1.7
carbon source D-Glucose-6-Phosphate (C) -1.4 -0.4 N.D. N.D. +1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.7 +0.6 N.D. N.D. -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.9 +0.4 N.D. N.D. -0.9
stress RCH2_defined_glucose_5mM with Adenine 2 mM -0.3 -0.2 N.D. N.D. +2.7
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -0.2 -0.0 N.D. N.D. +2.7
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.5 -0.2 N.D. N.D. +2.3
stress RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM +0.6 +0.2 N.D. N.D. +2.1
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -0.1 +0.5 N.D. N.D. +2.7
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.8 -0.2 N.D. N.D. +5.0
stress RCH2_defined_glucose_5mM with Adenine 5 mM +0.0 -0.5 N.D. N.D. +5.0
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.6 -0.2 N.D. N.D. +4.8
stress RCH2_defined_glucose_5mM with Adenine 5 mM +1.3 +0.1 N.D. N.D. +5.3
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