Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003592 and ABIE53_003856 are separated by 48 nucleotidesABIE53_003856 and ABIE53_003593 are separated by 99 nucleotidesABIE53_003593 and ABIE53_003594 are separated by 185 nucleotidesABIE53_003594 and ABIE53_003595 overlap by 4 nucleotides ABIE53_003592: ABIE53_003592 - octaprenyl-diphosphate synthase, at 4,032,566 to 4,033,558 _003592 ABIE53_003856: ABIE53_003856 - tRNA-Pro, at 4,033,607 to 4,033,683 _003856 ABIE53_003593: ABIE53_003593 - Mg2+/Co2+ transporter CorB, at 4,033,783 to 4,035,183 _003593 ABIE53_003594: ABIE53_003594 - type IV pilus assembly protein PilB, at 4,035,369 to 4,036,661 _003594 ABIE53_003595: ABIE53_003595 - type IV pilus assembly protein PilC, at 4,036,658 to 4,037,887 _003595
Group Condition ABIE53_003592 ABIE53_003856 ABIE53_003593 ABIE53_003594 ABIE53_003595
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. N.D. -0.6 -0.3 -0.5
stress RCH2_defined_glucose_5mM with Adenine 4 mM N.D. N.D. -0.6 -0.3 -0.3
stress RCH2_defined_glucose_5mM with Adenine 4 mM N.D. N.D. -0.6 -0.1 -0.1
carbon source L-Proline (C) N.D. N.D. -0.3 -0.4 -0.2
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. N.D. -0.8 +0.1 -0.1
carbon source L-Histidine (C) N.D. N.D. -0.3 +0.1 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. +0.3 -0.2 -0.3
carbon source Acetylated xylan 10 g/L (C) N.D. N.D. -0.6 +0.3 +0.2
carbon source Acetylated xylan 10 g/L (C) N.D. N.D. -0.6 +0.4 +0.2
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM N.D. N.D. -0.4 +0.2 +0.3
r2a outgrowth control R2A outgrowth control N.D. N.D. -0.3 +0.3 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.7 -0.2 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.2 -0.2 +0.3
plant outgrowth control Plant outgrowth control N.D. N.D. -0.2 +0.4 +0.2
carbon source D-Lactate (C) N.D. N.D. +0.3 +0.6 -0.4
plant outgrowth control Plant outgrowth control N.D. N.D. -0.1 +0.4 +0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. +0.4 -0.1 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.7 +0.1 -0.0
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.4 +0.4 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.7 +0.2 -0.1
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut N.D. N.D. +0.2 +0.3 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.4 +0.3 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.1 +0.6 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.4 +0.1 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.4 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. +0.4 -0.3 +0.7
plant outgrowth control Plant outgrowth control N.D. N.D. +0.2 +0.6 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +1.1 -0.0 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.9 +0.0 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +1.1 -0.0 +0.2
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