Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003571 and ABIE53_003572 are separated by 97 nucleotidesABIE53_003572 and ABIE53_003573 are separated by 25 nucleotidesABIE53_003573 and ABIE53_003574 are separated by 259 nucleotidesABIE53_003574 and ABIE53_003575 are separated by 30 nucleotides ABIE53_003571: ABIE53_003571 - thiol peroxidase, at 4,012,049 to 4,012,549 _003571 ABIE53_003572: ABIE53_003572 - adenosine kinase, at 4,012,647 to 4,013,585 _003572 ABIE53_003573: ABIE53_003573 - outer membrane lipoprotein SlyB, at 4,013,611 to 4,014,087 _003573 ABIE53_003574: ABIE53_003574 - hypothetical protein, at 4,014,347 to 4,014,994 _003574 ABIE53_003575: ABIE53_003575 - hypothetical protein, at 4,015,025 to 4,015,351 _003575
Group Condition ABIE53_003571 ABIE53_003572 ABIE53_003573 ABIE53_003574 ABIE53_003575
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -2.3 -2.8 -0.1 -3.0 -1.4
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -2.1 -2.4 -0.2 -2.6 -1.8
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -3.3 -2.2 -0.1 -2.5 -0.7
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -3.8 -2.1 -0.5 -1.5 -0.4
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -2.3 -2.9 -0.2 -1.6 -0.2
stress M9 with 3-methyl-2-butenol 2 g/L -2.3 +1.4 +0.4 -2.6 -1.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.8 -3.4 -0.3 +2.1 +1.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.2 -1.6 -0.6 +1.8 +1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 -3.1 -0.3 +1.9 +2.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 -2.2 -0.5 +1.9 +1.9
carbon source D-Ribose (C) -3.4 -0.2 -0.1 +2.3 +1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.4 -2.2 +0.1 +2.7 +2.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.7 -2.9 -0.4 +5.8 +3.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 -3.1 -0.5 +5.9 +3.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 -0.0 -0.0 +3.0 +2.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.8 -0.3 +3.1 +2.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 -1.4 +0.2 +2.4 +3.7
carbon source D-Gluconic Acid (C) -1.5 -0.2 -0.0 +3.5 +2.2
carbon source D-Serine (C) -2.4 -0.0 -0.1 +4.1 +2.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.7 -0.3 +3.3 +2.9
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.9 -1.1 +0.0 +4.6 +3.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.0 -1.2 -0.3 +3.3 +4.8
carbon source D-Serine (C) -0.5 -0.3 +0.2 +4.0 +2.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.2 -2.0 -0.2 +5.5 +4.9
carbon source L-Serine (C) -0.3 -0.2 +0.1 +4.2 +2.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 -0.6 +0.3 +3.5 +3.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 -0.6 +0.1 +3.4 +3.9
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.8 -1.1 -0.4 +3.6 +3.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 -0.1 -0.1 +3.2 +3.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.4 -0.1 +4.7 +3.5
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ABIE53_003572
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ABIE53_003575
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