Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003562 and ABIE53_003563 overlap by 4 nucleotidesABIE53_003563 and ABIE53_003564 are separated by 281 nucleotidesABIE53_003564 and ABIE53_003565 are separated by 6 nucleotidesABIE53_003565 and ABIE53_003566 are separated by 194 nucleotides ABIE53_003562: ABIE53_003562 - putative esterase YcpF (UPF0227 family), at 4,003,458 to 4,004,060 _003562 ABIE53_003563: ABIE53_003563 - UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 4,004,057 to 4,005,451 _003563 ABIE53_003564: ABIE53_003564 - hypothetical protein, at 4,005,733 to 4,006,386 _003564 ABIE53_003565: ABIE53_003565 - thiol-disulfide isomerase/thioredoxin, at 4,006,393 to 4,006,965 _003565 ABIE53_003566: ABIE53_003566 - 3-dehydroquinate dehydratase-2, at 4,007,160 to 4,007,615 _003566
Group Condition ABIE53_003562 ABIE53_003563 ABIE53_003564 ABIE53_003565 ABIE53_003566
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -1.6 -1.0 -3.9 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -1.6 -1.2 -3.8 -1.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -1.7 -1.2 -4.3 -0.0
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -0.1 -2.4 -0.1 -4.5 -0.3
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.6 -3.5 +0.2 -2.6 -0.6
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.2 -2.4 +0.0 -4.3 -0.1
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.2 -2.1 -0.1 -4.2 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.9 -1.0 -4.0 -0.6
stress RCH2_defined_glucose_5mM with Salicylic 5 mM +0.0 -2.3 +0.3 -4.4 -0.5
stress RCH2_defined_glucose_5mM with Adenine 5 mM -1.3 -4.1 +0.1 -1.1 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -2.3 -0.5 -3.8 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -2.2 -0.4 -3.8 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -1.3 -0.6 -4.0 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -2.2 -1.0 -3.1 -0.1
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM -0.3 -0.8 -0.0 -4.3 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.6 -0.3 -4.2 -0.5
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.1 -2.2 -0.2 -2.7 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 -2.1 -0.9 -2.3 -0.4
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM +0.2 -2.0 -0.1 -3.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -2.5 -0.8 -2.9 +0.6
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.4 -2.1 +0.1 -2.9 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 -0.8 -0.6 -4.1 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.8 -0.7 -3.5 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -2.5 -0.4 -2.6 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.9 +0.2 -3.3 -1.7
carbon source Shikimic Acid 5 mM (C) +0.1 -1.6 -0.2 -2.9 +0.9
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.7 +1.3 -0.9 -2.4 +0.6
carbon source Azelaic 20 mM (C) +0.1 +2.1 +0.2 -2.2 -1.5
carbon source Azelaic 20 mM (C) -0.2 +2.0 +0.3 -2.3 -1.0
carbon source Glucuronamide (C) +0.8 +1.7 +0.7 -2.8 -0.0
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