Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003559 and ABIE53_003560 are separated by 46 nucleotidesABIE53_003560 and ABIE53_003561 overlap by 4 nucleotidesABIE53_003561 and ABIE53_003562 are separated by 239 nucleotidesABIE53_003562 and ABIE53_003563 overlap by 4 nucleotides ABIE53_003559: ABIE53_003559 - monofunctional biosynthetic peptidoglycan transglycosylase, at 3,999,469 to 4,000,191 _003559 ABIE53_003560: ABIE53_003560 - shikimate dehydrogenase, at 4,000,238 to 4,001,101 _003560 ABIE53_003561: ABIE53_003561 - exoribonuclease-2, at 4,001,098 to 4,003,218 _003561 ABIE53_003562: ABIE53_003562 - putative esterase YcpF (UPF0227 family), at 4,003,458 to 4,004,060 _003562 ABIE53_003563: ABIE53_003563 - UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 4,004,057 to 4,005,451 _003563
Group Condition ABIE53_003559 ABIE53_003560 ABIE53_003561 ABIE53_003562 ABIE53_003563
stress RCH2_defined_glucose_5mM with Adenine 5 mM +0.1 N.D. -1.7 -1.3 -4.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 N.D. -4.1 -0.1 -1.7
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.1 N.D. -1.5 -0.6 -3.5
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.0 N.D. -2.1 -0.5 -2.7
stress RCH2_defined_glucose_5mM with Adenine 5 mM +0.0 N.D. -1.8 -0.6 -2.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 N.D. -3.9 -0.2 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 N.D. -2.5 -0.0 -1.8
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.2 N.D. -2.1 -0.1 -2.0
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.0 N.D. -2.3 +0.4 -1.7
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.1 N.D. -1.3 -0.2 -2.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. -1.5 -0.3 -1.9
soil extract Indole-3-pyruvic 5 mM in soil extract -0.1 N.D. -3.2 -0.8 +0.8
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -0.0 N.D. -1.4 +0.3 -2.2
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM +0.0 N.D. -0.7 -0.1 -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 N.D. -2.4 +0.2 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. -1.0 +0.9 -2.5
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.1 N.D. -1.0 +0.4 -2.1
carbon source Acetylated xylan 10 g/L (C) -0.2 N.D. -0.9 +0.4 -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. +0.4 +0.5 -2.5
carbon source D-Xylose (C) +0.1 N.D. -2.3 -0.3 +1.0
carbon source m-Inositol (C) +0.1 N.D. -2.2 -0.2 +0.8
carbon source L-Threonine (C) +0.1 N.D. -2.3 +0.1 +0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. +1.5 -0.5 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. +1.1 +0.3 -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 N.D. +1.2 +0.3 -2.1
carbon source Azelaic 20 mM (C) -0.0 N.D. -1.0 +0.1 +2.1
stress M9 with 3-methyl-2-butenol 2 g/L +0.2 N.D. -0.5 -0.5 +2.9
stress M9 with 3-methyl-2-butenol 2 g/L +0.2 N.D. -0.0 -0.5 +2.7
stress M9 with 3-methyl-2-butenol 2 g/L +0.3 N.D. -0.2 -0.4 +3.2
stress M9 with 3-methyl-2-butenol 2 g/L +0.3 N.D. -0.1 -0.5 +3.3
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