Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003554 and ABIE53_003555 are separated by 165 nucleotidesABIE53_003555 and ABIE53_003556 overlap by 4 nucleotidesABIE53_003556 and ABIE53_003557 are separated by 36 nucleotidesABIE53_003557 and ABIE53_003558 overlap by 4 nucleotides ABIE53_003554: ABIE53_003554 - L-arabinose transport system substrate-binding protein, at 3,993,980 to 3,994,978 _003554 ABIE53_003555: ABIE53_003555 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 3,995,144 to 3,995,920 _003555 ABIE53_003556: ABIE53_003556 - 2-dehydro-3-deoxyphosphogalactonate aldolase, at 3,995,917 to 3,996,597 _003556 ABIE53_003557: ABIE53_003557 - 2-dehydro-3-deoxygalactonokinase, at 3,996,634 to 3,997,818 _003557 ABIE53_003558: ABIE53_003558 - DNA-binding IclR family transcriptional regulator, at 3,997,815 to 3,998,822 _003558
Group Condition ABIE53_003554 ABIE53_003555 ABIE53_003556 ABIE53_003557 ABIE53_003558
carbon source D-Galactose (C) -2.2 -1.7 -4.1 -3.3 -2.8
carbon source D-Galactose (C) -2.5 -1.6 -3.3 -3.5 -3.3
carbon source Beta-Lactose (C) -0.6 -0.4 -6.4 -2.2 -4.3
carbon source Pectin 10 g/L (C) -0.7 -2.2 -3.9 -3.8 -2.9
carbon source Pectin 10 g/L (C) -1.1 -1.3 -3.3 -3.0 -2.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.3 -6.7 -0.2 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.5 -6.4 +0.2 -0.0
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.5 -0.4 -5.4 -0.9 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.1 -5.9 +1.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.7 -5.5 +1.9 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.4 -5.7 +1.2 +0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 +0.7 -4.4 +1.5 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.9 -2.6 -2.6 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 +0.5 -5.3 +2.5 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 +0.2 -5.1 +2.9 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +0.6 -4.3 +2.3 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.4 -5.0 +3.0 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 +0.6 -4.1 +2.6 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.4 -5.3 +4.6 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 +0.2 -2.4 +3.1 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 +1.0 -4.2 +3.8 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.5 -4.8 +4.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.1 -4.3 +5.6 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.7 -3.8 +3.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.9 -4.1 +4.7 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +1.1 -2.7 +4.1 -0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.5 +0.9 -3.1 +4.6 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +1.4 -2.9 +11.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +1.8 -1.6 +11.2 -0.7
carbon source L-Arabinose (C) +1.4 +3.5 +1.1 +2.0 +3.0
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