Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003548 and ABIE53_003549 are separated by 84 nucleotidesABIE53_003549 and ABIE53_003550 are separated by 234 nucleotidesABIE53_003550 and ABIE53_003551 overlap by 4 nucleotidesABIE53_003551 and ABIE53_003552 are separated by 27 nucleotides ABIE53_003548: ABIE53_003548 - orotidine-5'-phosphate decarboxylase, at 3,987,249 to 3,988,064 _003548 ABIE53_003549: ABIE53_003549 - aldose 1-epimerase, at 3,988,149 to 3,989,228 _003549 ABIE53_003550: ABIE53_003550 - L-arabinonolactonase, at 3,989,463 to 3,990,383 _003550 ABIE53_003551: ABIE53_003551 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 3,990,380 to 3,991,180 _003551 ABIE53_003552: ABIE53_003552 - L-arabinose transport system permease protein, at 3,991,208 to 3,992,224 _003552
Group Condition ABIE53_003548 ABIE53_003549 ABIE53_003550 ABIE53_003551 ABIE53_003552
carbon source L-Arabinose (C) N.D. -0.1 -2.8 -3.8 +0.6
carbon source L-Arabinose (C) N.D. -0.1 -3.3 -3.5 +1.8
carbon source D-Galactose (C) N.D. -0.3 -0.3 -2.0 -2.3
carbon source D-Galactose (C) N.D. -0.0 -0.4 -1.7 -2.4
carbon source Beta-Lactose (C) N.D. +0.1 -1.4 -2.0 -0.3
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM N.D. +0.7 -1.4 -1.0 -0.7
carbon source Pectin 10 g/L (C) N.D. +0.0 -0.6 -1.1 -0.5
carbon source Pectin 10 g/L (C) N.D. -0.1 -0.6 -0.9 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 +0.0 -2.3 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 -0.3 -1.9 +0.1
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM N.D. +0.7 -1.1 -0.5 -0.8
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM N.D. +0.3 -0.7 -0.5 -0.6
stress RCH2_defined_glucose_5mM with Serotonin 5 mM N.D. +0.5 -0.9 -0.5 -0.6
stress RCH2_defined_glucose_5mM with Pyridoxal 0.5 mM N.D. +0.5 -0.9 -0.5 -0.4
stress RCH2_defined_glucose_5mM with Pyridoxal 0.5 mM N.D. +0.4 -0.8 -0.6 -0.4
stress RCH2_defined_glucose_5mM with Salicylic 5 mM N.D. +0.4 -0.9 -0.3 -0.5
stress RCH2_defined_glucose_5mM with 2-Deoxy-D-glucose 5 mM N.D. +0.4 -0.7 -0.5 -0.5
stress RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM N.D. +0.4 -0.8 -0.5 -0.4
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM N.D. +0.6 -0.9 -0.4 -0.3
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM N.D. +0.5 -0.8 -0.5 -0.4
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM N.D. +0.6 -0.7 +0.1 -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.5 +1.0 -0.6 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.6 +1.0 -0.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.5 +1.1 +0.1 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.9 +0.9 +0.6 -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.3 +0.8 -0.5 +0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.4 +0.8 +0.5 -0.4
soil extract Sucrose 5 mM in soil extract N.D. -0.4 +1.0 +0.3 +0.5
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. -0.0 +0.8 +0.4 +0.7
carbon source D-Fructose (C) N.D. -0.1 +0.6 +0.5 +0.8
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