Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_003531 and ABIE53_003532 are separated by 148 nucleotidesABIE53_003532 and ABIE53_003533 are separated by 14 nucleotidesABIE53_003533 and ABIE53_003534 are separated by 275 nucleotidesABIE53_003534 and ABIE53_003535 are separated by 228 nucleotides ABIE53_003531: ABIE53_003531 - Fur family ferric uptake transcriptional regulator, at 3,970,014 to 3,970,442 _003531 ABIE53_003532: ABIE53_003532 - ureidoglycolate lyase, at 3,970,591 to 3,971,127 _003532 ABIE53_003533: ABIE53_003533 - allantoicase, at 3,971,142 to 3,972,152 _003533 ABIE53_003534: ABIE53_003534 - aerobic C4-dicarboxylate transport protein, at 3,972,428 to 3,973,756 _003534 ABIE53_003535: ABIE53_003535 - GntR family transcriptional repressor for pyruvate dehydrogenase complex, at 3,973,985 to 3,974,680 _003535
Group Condition ABIE53_003531 ABIE53_003532 ABIE53_003533 ABIE53_003534 ABIE53_003535
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.0 -0.3 +0.1 +0.4 -4.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.3 -0.9 +0.3 +0.2 -3.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.0 +0.7 -0.0 +0.1 -4.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.8 -0.6 +0.2 +0.2 -4.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.0 -1.2 +0.2 +0.5 -2.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 -2.3 +0.2 +0.1 -2.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.2 -1.1 +0.0 +0.2 -1.3
nitrogen source histamine 2mM N source -2.3 -3.3 -0.2 -0.1 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.9 -1.3 +0.0 +0.2 -1.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.3 +0.8 -0.1 +0.0 -4.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.9 -0.8 +0.1 +0.2 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 +0.1 +0.3 -0.1 -2.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.2 +0.1 -0.1 +0.3 -1.5
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -3.5 -0.8 +0.2 +0.1 -1.3
carbon source Azelaic 20 mM (C) -4.4 +0.3 -0.2 +0.0 -1.0
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -4.1 -0.2 +0.3 +0.5 -1.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -3.1 +0.2 +0.5 -0.2 -2.3
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -4.0 +0.6 +0.0 +0.2 -1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.0 +0.4 -0.1 +0.3 -1.3
stress RCH2_defined_glucose_5mM with Serotonin 5 mM -3.7 +1.1 -0.0 +0.3 -2.3
stress RCH2_defined_glucose_5mM with 4-Pyridoxic 5 mM -3.9 +0.3 +0.1 +0.2 -1.3
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -3.8 +0.7 -0.1 -0.1 -1.3
stress RCH2_defined_glucose_5mM with Chlorogenic 2 mM -3.9 +0.5 -0.0 +0.3 -1.4
carbon source Inosine (C) -3.6 +0.6 +0.0 +0.2 -1.4
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM -3.9 +0.7 -0.1 +0.1 -1.0
stress RCH2_defined_glucose_5mM with Chlorogenic 2 mM -3.6 +0.4 +0.1 +0.4 -1.4
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -3.9 +1.3 +0.2 +0.0 -1.7
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM -3.7 +0.4 +0.2 +0.4 -1.2
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -4.5 +1.1 -0.2 -0.0 -0.1
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -3.6 +1.4 +0.0 +0.1 -0.9
remove
ABIE53_003531
plot		 remove
ABIE53_003532
plot		 remove
ABIE53_003533		 remove
ABIE53_003534
plot		 remove
ABIE53_003535
plot