Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003515 and ABIE53_003516 are separated by 270 nucleotidesABIE53_003516 and ABIE53_003517 are separated by 119 nucleotidesABIE53_003517 and ABIE53_003518 are separated by 290 nucleotidesABIE53_003518 and ABIE53_003519 are separated by 79 nucleotides ABIE53_003515: ABIE53_003515 - GntP family gluconate:H+ symporter, at 3,941,208 to 3,942,602 _003515 ABIE53_003516: ABIE53_003516 - 2-dehydro-3-deoxyphosphogluconate aldolase/(4S)-4-hydroxy-2-oxoglutarate aldolase, at 3,942,873 to 3,943,514 _003516 ABIE53_003517: ABIE53_003517 - phosphogluconate dehydratase, at 3,943,634 to 3,945,562 _003517 ABIE53_003518: ABIE53_003518 - RpiR family carbohydrate utilization transcriptional regulator, at 3,945,853 to 3,946,698 _003518 ABIE53_003519: ABIE53_003519 - outer membrane protein OmpA-like peptidoglycan-associated protein, at 3,946,778 to 3,947,524 _003519
Group Condition ABIE53_003515 ABIE53_003516 ABIE53_003517 ABIE53_003518 ABIE53_003519
stress M9 with Isopropyl alcohol 21 g/L -0.2 N.D. -5.3 -0.2 +0.1
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.1 N.D. -4.5 -1.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 N.D. -2.4 -2.3 -0.3
stress M9 with Propan-1-ol 13 g/L +0.0 N.D. -5.4 -0.2 +0.1
m9 no stress control M9 no stress control -0.1 N.D. -5.1 -0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -2.4 -3.1 +0.3
stress M9 with Propan-1-ol 13 g/L -0.0 N.D. -4.9 -0.3 +0.1
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.0 N.D. -4.7 -0.6 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -2.6 -2.6 +0.1
m9 no stress control M9 no stress control -0.0 N.D. -4.9 -0.2 +0.1
m9 no stress control M9 no stress control -0.1 N.D. -4.8 -0.1 -0.0
stress M9 with Ethanol 2.5 vol% -0.0 N.D. -4.8 -0.3 +0.1
stress M9 with 3-methyl-3-butenol 4.5 g/L -0.0 N.D. -4.9 -0.1 +0.1
stress RCH2_defined_glucose_5mM with 4-Pyridoxic 5 mM +0.1 N.D. -4.6 -0.5 -0.0
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.1 N.D. -4.3 -0.9 +0.2
stress RCH2_defined_glucose_5mM with Salicylic 5 mM +0.2 N.D. -4.4 -0.9 +0.3
stress M9 with 3-methyl-3-butenol 4.5 g/L -0.2 N.D. -4.4 -0.3 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 N.D. -3.3 -1.9 +0.3
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM +0.2 N.D. -4.4 -0.4 +0.2
stress RCH2_defined_glucose_5mM with Nerolidol 5 mM -0.1 N.D. -4.3 -0.4 +0.4
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.1 N.D. -3.7 -0.9 +0.2
stress RCH2_defined_glucose_5mM with 2-Deoxy-D-glucose 5 mM +0.2 N.D. -4.2 -0.4 +0.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.1 N.D. -3.9 -0.8 +0.4
stress RCH2_defined_glucose_5mM with Chlorogenic 2 mM +0.2 N.D. -4.0 -0.6 +0.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.2 N.D. -3.8 -0.8 +0.3
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM +0.2 N.D. -3.9 -0.8 +0.4
carbon source D-Glucose-6-Phosphate (C) -0.2 N.D. -2.8 +2.7 +0.4
soil extract Indole-3-pyruvic 5 mM in soil extract -0.3 N.D. +3.8 -0.8 +0.4
carbon source D-Gluconic Acid (C) +0.2 N.D. -2.7 +8.3 +0.6
carbon source D-Gluconic Acid (C) +0.0 N.D. -2.3 +8.2 +0.7
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