Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003490 and ABIE53_003491 are separated by 56 nucleotidesABIE53_003491 and ABIE53_003492 are separated by 151 nucleotidesABIE53_003492 and ABIE53_003493 are separated by 128 nucleotidesABIE53_003493 and ABIE53_003494 are separated by 54 nucleotides ABIE53_003490: ABIE53_003490 - Fis family transcriptional regulator, at 3,918,014 to 3,918,247 _003490 ABIE53_003491: ABIE53_003491 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 3,918,304 to 3,919,869 _003491 ABIE53_003492: ABIE53_003492 - hypothetical protein, at 3,920,021 to 3,920,260 _003492 ABIE53_003493: ABIE53_003493 - crossover junction endodeoxyribonuclease RuvC, at 3,920,389 to 3,920,931 _003493 ABIE53_003494: ABIE53_003494 - Holliday junction DNA helicase RuvA, at 3,920,986 to 3,921,567 _003494
Group Condition ABIE53_003490 ABIE53_003491 ABIE53_003492 ABIE53_003493 ABIE53_003494
r2a outgrowth control R2A outgrowth control -1.1 N.D. -0.4 N.D. -4.2
phage Burk1_100 -1.3 N.D. -0.3 N.D. -2.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 N.D. +0.1 N.D. -3.2
stress RCH2_defined_glucose_5mM with Salicylic 5 mM -1.9 N.D. -0.0 N.D. -2.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -0.3 N.D. -3.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 N.D. -0.2 N.D. -3.5
carbon source L-Phenylalanine (C) +1.0 N.D. -0.1 N.D. -3.8
carbon source propionate (C) +0.7 N.D. +0.1 N.D. -3.6
carbon source 4-Hydroxybenzoic Acid (C) +0.7 N.D. +0.0 N.D. -3.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 N.D. +0.1 N.D. -3.3
carbon source a-Ketoglutaric (C) +0.9 N.D. +0.1 N.D. -3.4
carbon source L-Serine (C) +1.1 N.D. -0.1 N.D. -3.1
carbon source D-Alanine (C) +0.9 N.D. +0.1 N.D. -3.0
carbon source L-Phenylalanine (C) +1.1 N.D. -0.0 N.D. -2.9
carbon source D-Ribose (C) +0.9 N.D. +0.2 N.D. -2.9
carbon source L-Glutamic (C) +1.0 N.D. +0.2 N.D. -2.9
carbon source Beta-Lactose (C) +1.5 N.D. -0.0 N.D. -3.2
carbon source D-Alanine (C) +1.1 N.D. +0.3 N.D. -3.1
carbon source Glucuronamide (C) +1.2 N.D. +0.0 N.D. -2.8
carbon source L-Proline (C) +1.0 N.D. +0.1 N.D. -2.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.8 N.D. -0.2 N.D. -3.0
carbon source acetate (C) +1.0 N.D. +0.3 N.D. -2.8
stress M9 with 3-methyl-2-butenol 2 g/L +1.0 N.D. +0.3 N.D. -2.6
stress RCH2_defined_glucose_5mM with caffeic 1 mM +1.1 N.D. +0.1 N.D. -2.6
carbon source Glucuronamide (C) +1.5 N.D. -0.1 N.D. -2.7
carbon source D-Cellobiose (C) +1.4 N.D. -0.0 N.D. -2.6
carbon source L-Alanine (C) +1.5 N.D. -0.0 N.D. -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.7 N.D. -0.1 N.D. -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.5 N.D. +0.1 N.D. -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.4 N.D. +0.5 N.D. -2.4
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