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Fitness for 5 genes in
Paraburkholderia graminis OAS925
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE53_003432 and ABIE53_003433 are separated by 44 nucleotides
ABIE53_003433 and ABIE53_003434 are separated by 167 nucleotides
ABIE53_003434 and ABIE53_003435 are separated by 168 nucleotides
ABIE53_003435 and ABIE53_003436 are separated by 40 nucleotides
ABIE53_003432: ABIE53_003432 - branched-chain amino acid aminotransferase, at 3,860,560 to 3,861,483
_003432
ABIE53_003433: ABIE53_003433 - putative Zn-finger protein, at 3,861,528 to 3,861,722
_003433
ABIE53_003434: ABIE53_003434 - heptosyltransferase-2, at 3,861,890 to 3,862,915
_003434
ABIE53_003435: ABIE53_003435 - ketosteroid isomerase-like protein, at 3,863,084 to 3,863,530
_003435
ABIE53_003436: ABIE53_003436 - putative alpha/beta-fold hydrolase, at 3,863,571 to 3,864,710
_003436
Group
Condition
ABIE53
_003432
ABIE53
_003433
ABIE53
_003434
ABIE53
_003435
ABIE53
_003436
stress
RCH2_defined_glucose_5mM with Lumazine 5 mM
-0.4
-1.1
-5.3
-0.8
-0.7
stress
RCH2_defined_glucose_5mM with Salicylic 5 mM
-1.0
-1.2
-4.9
+0.1
-0.3
stress
RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM
-0.7
-1.0
-5.0
-0.2
-0.3
stress
RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM
-0.7
-0.8
-5.2
+0.2
-0.5
stress
RCH2_defined_glucose_5mM with Lumazine 5 mM
-0.5
-1.2
-4.1
-0.5
-0.5
carbon source
4-Hydroxybenzoic Acid (C)
-0.5
-0.8
-4.3
-0.0
-1.0
motility_chemotaxis
Motility_chemotaxis, R2A; outer cut
-0.9
-0.9
-5.2
+0.3
-0.1
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.8
-0.4
-5.2
-0.2
+0.0
stress
RCH2_defined_glucose_5mM with Serotonin 5 mM
-0.7
-1.0
-4.5
-0.0
-0.3
stress
RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
-0.6
-1.2
-4.7
+0.1
-0.1
stress
RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM
-0.5
-0.4
-5.0
+0.1
-0.5
stress
RCH2_defined_glucose_5mM with Pyridoxal 0.5 mM
-0.7
-0.6
-4.9
+0.1
-0.2
motility_chemotaxis
Motility_chemotaxis, R2A; outer cut
-0.9
-0.5
-5.1
+0.2
+0.0
carbon source
shik 5mM
-0.7
-0.7
-4.3
-0.2
-0.4
stress
RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM
-0.6
-1.1
-4.3
+0.1
-0.2
nitrogen source
Ammonium chloride 30 mM (N)
-0.5
-0.8
-4.8
+0.1
-0.1
stress
RCH2_defined_glucose_5mM with Cinnamic 5 mM
-0.6
-0.6
-5.1
+0.5
-0.1
stress
RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
-0.8
-1.1
-4.1
+0.3
-0.2
stress
RCH2_defined_glucose_5mM with Cinnamic 5 mM
-0.8
-0.9
-4.4
+0.4
-0.1
carbon source
D-Glucuronic Acid (C)
+1.5
+2.1
+2.7
+0.0
-0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+1.2
+1.5
+4.0
+0.1
+0.0
biofilm
biofilm; attached cells from 96 well plate assay in R2A
+1.4
+1.9
+4.0
+0.1
-0.0
biofilm
biofilm; attached cells from 96 well plate assay in R2A
+1.4
+1.8
+3.9
+0.1
+0.2
biofilm
biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound
+1.3
+2.2
+4.2
+0.0
-0.1
biofilm
biofilm; planktonic cells from 96 well plate assay in R2A
+1.6
+2.0
+4.3
-0.0
+0.1
biofilm
biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound
+1.4
+2.0
+4.5
+0.2
+0.2
carbon source
D-Glucuronic Acid (C)
+1.9
+2.6
+4.1
+0.1
-0.1
biofilm
biofilm; planktonic cells from 96 well plate assay in R2A
+1.7
+2.2
+4.4
-0.0
+0.2
carbon source
L-Proline (C)
+2.3
+2.8
+3.5
+0.0
+0.2
carbon source
L-Histidine (C)
+2.5
+3.5
+4.7
+0.3
-0.2
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