Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003398 and ABIE53_003399 overlap by 4 nucleotidesABIE53_003399 and ABIE53_003400 overlap by 8 nucleotidesABIE53_003400 and ABIE53_003401 are separated by 68 nucleotidesABIE53_003401 and ABIE53_003402 are separated by 38 nucleotides ABIE53_003398: ABIE53_003398 - zinc/manganese transport system substrate-binding protein, at 3,822,830 to 3,823,789 _003398 ABIE53_003399: ABIE53_003399 - zinc/manganese transport system ATP-binding protein, at 3,823,786 to 3,824,766 _003399 ABIE53_003400: ABIE53_003400 - zinc/manganese transport system permease protein, at 3,824,759 to 3,825,541 _003400 ABIE53_003401: ABIE53_003401 - S-formylglutathione hydrolase, at 3,825,610 to 3,826,476 _003401 ABIE53_003402: ABIE53_003402 - S-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase, at 3,826,515 to 3,827,621 _003402
Group Condition ABIE53_003398 ABIE53_003399 ABIE53_003400 ABIE53_003401 ABIE53_003402
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.0 -4.1 -3.7 +0.1 -0.3
stress R2A with PEG 6000 16 vol% -2.4 -2.3 -2.0 -1.5 -3.4
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -3.1 -4.3 -2.7 -0.6 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.4 -3.9 -3.2 +0.0 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.5 -3.5 -3.3 +0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.6 -3.8 -2.8 +0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 -3.7 -3.4 +0.2 -0.1
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -3.4 -3.4 -3.4 -0.1 +0.2
stress R2A with PEG 6000 16 vol% -2.4 -2.1 -2.0 -1.1 -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 -3.1 -3.4 +0.1 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 -3.2 -3.2 +0.2 -0.2
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -3.0 -3.3 -2.6 -0.6 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.0 -3.2 -3.5 -0.0 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.2 -3.2 -3.4 +0.1 +0.1
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -3.5 -2.6 -3.2 -0.1 -0.0
stress RCH2_defined_glucose_5mM with Salicylic 5 mM -2.7 -3.2 -3.3 +0.0 -0.0
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -2.8 -3.1 -3.3 +0.1 -0.1
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -3.2 -3.1 -2.8 -0.0 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.1 -2.6 -3.4 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 -3.1 -3.3 +0.3 +0.4
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.6 -2.8 -3.2 -0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.0 -3.4 -3.1 +0.5 +0.4
stress R2A with PEG 6000 16 vol% -1.7 -2.1 -1.0 -1.1 -2.6
stress RCH2_defined_glucose_5mM with Pyridoxal 0.5 mM -2.2 -2.7 -3.5 -0.1 +0.1
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM -2.4 -3.0 -3.0 +0.1 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.7 -3.0 -2.5 +0.3 +0.1
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -2.6 -2.6 -2.6 +0.0 +0.2
soil extract 2,3-dihydroxybenzoic 5 mM in soil extract +3.2 +3.3 +3.1 +0.0 +0.5
soil extract 2,3-dihydroxybenzoic 5 mM in soil extract +3.3 +3.5 +3.4 +0.2 +0.5
carbon source D-Glucosamine Hydrochloride (C) +3.7 +3.8 +3.3 +0.4 +0.2
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