Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003379 and ABIE53_003380 are separated by 36 nucleotidesABIE53_003380 and ABIE53_003381 are separated by 10 nucleotidesABIE53_003381 and ABIE53_003382 are separated by 97 nucleotidesABIE53_003382 and ABIE53_003383 overlap by 4 nucleotides ABIE53_003379: ABIE53_003379 - arylformamidase, at 3,800,787 to 3,801,425 _003379 ABIE53_003380: ABIE53_003380 - kynureninase, at 3,801,462 to 3,802,712 _003380 ABIE53_003381: ABIE53_003381 - tryptophan 2,3-dioxygenase, at 3,802,723 to 3,803,667 _003381 ABIE53_003382: ABIE53_003382 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 3,803,765 to 3,804,502 _003382 ABIE53_003383: ABIE53_003383 - sugar (pentulose or hexulose) kinase, at 3,804,499 to 3,806,043 _003383
Group Condition ABIE53_003379 ABIE53_003380 ABIE53_003381 ABIE53_003382 ABIE53_003383
carbon source L-Tryptophan (C) -3.6 -4.2 -4.2 -0.4 -0.1
carbon source L-Tryptophan (C) -2.7 -3.3 -3.3 -0.0 -0.0
carbon source D-Ribose (C) -0.5 -0.2 +0.0 -0.3 -2.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.2 -0.3 +0.1 -2.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.3 -0.2 +0.2 -2.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.1 -0.2 +0.1 -2.1
carbon source D-Ribose (C) -0.2 -0.2 +0.1 -0.3 -1.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.4 +0.0 +0.1 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.0 +0.1 -0.2 -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.2 -0.1 +0.5 -2.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.1 -0.1 -0.0 -1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.2 +0.1 -0.0 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.4 +0.2 -0.1 -1.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.3 +0.2 -0.3 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.7 -0.2 -0.5 -0.2 -0.9
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -0.2 +0.4 -0.2 -1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 +0.1 +0.2 -0.6 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 +0.5 +0.3 -2.2
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.5 -0.1 -0.5 +0.4 +0.3
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.3 +0.4 -0.8 -0.7
soil extract Indole-3-pyruvic 5 mM in soil extract -0.6 +0.1 +0.2 +0.5 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.1 -0.4 +1.1 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.7 +0.1 +0.1 -0.3 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 +0.4 +0.2 +0.3 -1.3
carbon source Glycerol (C) +0.5 +0.0 +0.2 +0.4 -1.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.2 -0.1 +0.4 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.3 +0.6 +0.3 -0.9
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.4 +0.5 +0.8 +0.3
carbon source Xylitol (C) +0.3 -0.1 -0.0 +0.1 +1.4
carbon source Xylitol (C) +0.4 +0.1 +0.1 -0.1 +1.4
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ABIE53_003379
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