Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_003377	ABIE53_003378	ABIE53_003379	ABIE53_003380	ABIE53_003381
carbon source	L-Tryptophan (C)	+0.1	-4.1	-3.6	-4.2	-4.2
carbon source	L-Tryptophan (C)	+0.1	-3.6	-2.7	-3.3	-3.3
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.5	-0.9	-0.1	+0.2	-0.0
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.2	+0.2	-0.5	+0.1	-0.5
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM	-0.2	+0.5	-0.5	-0.1	-0.5
carbon source	Adenosine (C)	+0.1	+0.5	-0.8	-0.3	-0.2
carbon source	Inosine (C)	+0.3	+0.3	-0.7	-0.1	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.8	-0.9	+0.4	+0.3	+0.5
stress	RCH2_defined_glucose_5mM with Pyridoxal 1 mM	-0.3	+0.6	-0.4	-0.2	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	+0.6	-0.2	+0.1	-0.2
carbon source	D-Glucose (C)	+0.1	-0.3	+0.8	-0.1	-0.6
carbon source	Inosine (C)	+0.1	+0.7	-0.6	-0.2	-0.1
carbon source	D-Galactose (C)	-0.3	+0.2	+0.6	-0.2	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.4	-0.1	-0.3	-0.5
carbon source	L-Threonine (C)	+0.3	+0.2	+0.3	+0.1	-0.8
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	+0.5	+0.2	-0.4	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-0.4	+0.1	+0.3	+0.6
stress	RCH2_defined_glucose_5mM with Cinnamic 5 mM	+0.0	+0.9	-0.7	-0.0	+0.2
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.3	-0.6	-0.4	+0.5
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-0.1	+0.8	-0.2	-0.4	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	-0.7	+0.6	-0.1	+0.2
soil extract	2,3-dihydroxybenzoic 5 mM in soil extract	+0.2	-0.5	+0.6	+0.2	+0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.3	-0.6	+0.6	+0.2	-0.1
carbon source	D-Ribose (C)	+0.1	+1.0	-0.5	-0.2	+0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	+0.3	+0.6	+0.2	+0.1
carbon source	D-Glucosamine Hydrochloride (C)	+0.2	-0.4	+0.6	+0.2	+0.2
carbon source	D-Ribose (C)	+0.1	+1.0	-0.2	-0.2	+0.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.9	-0.0	+0.2	+0.2	-0.3
soil extract	Indole-3-pyruvic 5 mM in soil extract	+0.1	+2.2	-0.6	+0.1	+0.2
soil extract	Indole-3-pyruvic 5 mM in soil extract	+0.3	+2.4	-0.4	-0.2	+0.1