Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003372 and ABIE53_003373 are separated by 35 nucleotidesABIE53_003373 and ABIE53_003374 are separated by 143 nucleotidesABIE53_003374 and ABIE53_003375 are separated by 49 nucleotidesABIE53_003375 and ABIE53_003376 are separated by 248 nucleotides ABIE53_003372: ABIE53_003372 - hypothetical protein, at 3,794,874 to 3,795,077 _003372 ABIE53_003373: ABIE53_003373 - pyridoxamine 5'-phosphate oxidase, at 3,795,113 to 3,795,754 _003373 ABIE53_003374: ABIE53_003374 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,795,898 to 3,797,112 _003374 ABIE53_003375: ABIE53_003375 - uncharacterized protein YecE (DUF72 family), at 3,797,162 to 3,798,514 _003375 ABIE53_003376: ABIE53_003376 - peptide-methionine (S)-S-oxide reductase, at 3,798,763 to 3,799,311 _003376
Group Condition ABIE53_003372 ABIE53_003373 ABIE53_003374 ABIE53_003375 ABIE53_003376
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -3.6 +0.0 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -4.1 +0.3 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -3.6 -0.0 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -3.3 -0.1 -0.5
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. -4.0 +0.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -2.8 +0.4 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. -1.9 +0.3 -1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -2.8 +0.2 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -2.5 +0.3 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -2.2 +0.2 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -2.2 -0.0 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -2.0 +0.2 -0.3
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. -2.7 +0.4 +0.3
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. N.D. -2.5 +0.5 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. -1.6 +0.1 -0.4
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. N.D. -2.5 +0.3 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.6 +0.3 -0.4
stress RCH2_defined_glucose_5mM with Lumazine 5 mM N.D. N.D. -2.3 +0.3 +0.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. N.D. -2.3 +0.3 +0.3
stress RCH2_defined_glucose_5mM with Lumazine 5 mM N.D. N.D. -2.3 +0.4 +0.5
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. N.D. -2.1 +0.3 +0.3
stress RCH2_defined_glucose_5mM with Chlorogenic 2 mM N.D. N.D. -1.8 +0.3 +0.2
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM N.D. N.D. -1.8 +0.2 +0.4
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM N.D. N.D. -1.7 +0.3 +0.2
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM N.D. N.D. -1.7 +0.3 +0.2
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM N.D. N.D. -1.7 +0.3 +0.2
soil extract 2,3-dihydroxybenzoic 5 mM in soil extract N.D. N.D. -1.5 +0.3 +0.2
stress RCH2_defined_glucose_5mM with Chlorogenic 2 mM N.D. N.D. -1.5 +0.2 +0.3
stress RCH2_defined_glucose_5mM with Adenine 2 mM N.D. N.D. -1.4 +0.4 +0.2
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM N.D. N.D. -1.3 +0.4 +0.5
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