Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003347 and ABIE53_003348 are separated by 208 nucleotidesABIE53_003348 and ABIE53_003349 are separated by 172 nucleotidesABIE53_003349 and ABIE53_003350 are separated by 125 nucleotidesABIE53_003350 and ABIE53_003351 overlap by 4 nucleotides ABIE53_003347: ABIE53_003347 - 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase), at 3,770,948 to 3,771,748 _003347 ABIE53_003348: ABIE53_003348 - adenylate kinase, at 3,771,957 to 3,772,622 _003348 ABIE53_003349: ABIE53_003349 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 3,772,795 to 3,773,553 _003349 ABIE53_003350: ABIE53_003350 - regulator of sirC expression with transglutaminase-like and TPR domain, at 3,773,679 to 3,774,530 _003350 ABIE53_003351: ABIE53_003351 - putative peptidoglycan lipid II flippase, at 3,774,527 to 3,776,077 _003351
Group Condition ABIE53_003347 ABIE53_003348 ABIE53_003349 ABIE53_003350 ABIE53_003351
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -2.5 -0.7 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -2.5 -0.7 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -2.1 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. -0.9 -1.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. -1.5 -0.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.5 -0.5 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.6 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.4 -0.4 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.1 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.2 -0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.1 -0.5 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.4 -0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.2 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.1 -0.3 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. -1.0 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. -0.9 -0.3 N.D.
carbon source Adenosine (C) N.D. N.D. -0.7 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.4 -0.8 N.D.
carbon source Cinnamic and Ethanols N.D. N.D. -1.0 -0.2 N.D.
carbon source Adenosine (C) N.D. N.D. -0.6 -0.6 N.D.
carbon source Inosine (C) N.D. N.D. +0.4 -0.7 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. +0.5 -0.7 N.D.
stress RCH2_defined_glucose_5mM with Lumazine 5 mM N.D. N.D. +0.6 -0.6 N.D.
motility_chemotaxis Motility_chemotaxis, R2A; outer cut N.D. N.D. +0.6 -0.6 N.D.
nitrogen source Xanthine 5 mM (N) N.D. N.D. +0.8 -0.4 N.D.
carbon source Pectin 10 g/L (C) N.D. N.D. +0.8 -0.4 N.D.
motility_chemotaxis Motility_chemotaxis, R2A; outer cut N.D. N.D. +0.9 -0.5 N.D.
stress RCH2_defined_glucose_5mM with Nerolidol 5 mM N.D. N.D. +1.0 -0.2 N.D.
carbon source Azelaic 20 mM (C) N.D. N.D. +0.8 +0.4 N.D.
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. N.D. +1.8 +0.2 N.D.
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