Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003340 and ABIE53_003341 are separated by 72 nucleotidesABIE53_003341 and ABIE53_003342 are separated by 294 nucleotidesABIE53_003342 and ABIE53_003343 are separated by 312 nucleotidesABIE53_003343 and ABIE53_003344 are separated by 206 nucleotides ABIE53_003340: ABIE53_003340 - uncharacterized LabA/DUF88 family protein, at 3,762,064 to 3,763,659 _003340 ABIE53_003341: ABIE53_003341 - hypothetical protein, at 3,763,732 to 3,765,483 _003341 ABIE53_003342: ABIE53_003342 - hypothetical protein, at 3,765,778 to 3,766,353 _003342 ABIE53_003343: ABIE53_003343 - Fe-Mn family superoxide dismutase, at 3,766,666 to 3,767,244 _003343 ABIE53_003344: ABIE53_003344 - exodeoxyribonuclease VII large subunit, at 3,767,451 to 3,768,842 _003344
Group Condition ABIE53_003340 ABIE53_003341 ABIE53_003342 ABIE53_003343 ABIE53_003344
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -0.1 -0.2 N.D. -1.4
carbon source D-Mannose (C) -0.3 -0.1 -0.6 N.D. +0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 +0.2 -0.5 N.D. -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.1 -0.1 N.D. -0.3
stress RCH2_defined_glucose_5mM with Adenine 2 mM -0.1 +0.1 -0.6 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.2 -0.3 N.D. -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.2 -0.2 N.D. -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.1 -0.3 N.D. -0.5
stress RCH2_defined_glucose_5mM with Chlorogenic 0.5 mM +0.2 -0.0 -0.4 N.D. -0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 -0.3 -0.1 N.D. -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.2 -0.0 N.D. -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.3 -0.2 N.D. -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.3 -0.4 N.D. -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.1 +0.2 N.D. -0.4
plant outgrowth control Plant outgrowth control -0.4 -0.1 -0.2 N.D. +0.2
carbon source D-Galactose (C) -0.2 +0.2 -0.3 N.D. -0.2
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.2 -0.2 N.D. -0.3
carbon source Acetylated xylan 10 g/L (C) -0.7 +0.1 +0.2 N.D. +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.1 -0.3 N.D. -0.4
carbon source Laminarin 10 g/L (C) -0.4 +0.1 +0.2 N.D. -0.2
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM +0.2 +0.2 -0.3 N.D. -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.2 +0.1 N.D. -0.6
stress RCH2_defined_glucose_5mM with Serotonin 5 mM +0.2 +0.2 -0.2 N.D. -0.3
carbon source Acetylated xylan 10 g/L (C) -0.4 +0.1 +0.3 N.D. -0.1
stress R2A with Tricalcium phosphate 0.5 g/L -0.4 +0.1 +0.3 N.D. -0.1
carbon source Shikimic Acid 5 mM (C) -0.4 +0.1 +0.5 N.D. +0.0
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.3 -0.3 N.D. +0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 +0.1 +0.5 N.D. -0.2
stress R2A with Ethanol 2.5 vol% +0.2 +0.1 +0.4 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.1 +0.4 N.D. +0.1
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