Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003306 and ABIE53_003307 overlap by 4 nucleotidesABIE53_003307 and ABIE53_003308 are separated by 548 nucleotidesABIE53_003308 and ABIE53_003309 are separated by 174 nucleotidesABIE53_003309 and ABIE53_003310 are separated by 226 nucleotides ABIE53_003306: ABIE53_003306 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 3,727,678 to 3,728,835 _003306 ABIE53_003307: ABIE53_003307 - ATP-dependent Clp protease adaptor protein ClpS, at 3,728,832 to 3,729,146 _003307 ABIE53_003308: ABIE53_003308 - CspA family cold shock protein, at 3,729,695 to 3,729,901 _003308 ABIE53_003309: ABIE53_003309 - hypothetical protein, at 3,730,076 to 3,730,885 _003309 ABIE53_003310: ABIE53_003310 - hypothetical protein, at 3,731,112 to 3,731,861 _003310
Group Condition ABIE53_003306 ABIE53_003307 ABIE53_003308 ABIE53_003309 ABIE53_003310
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.5 -3.0 N.D. +0.0 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.2 -2.8 N.D. +0.2 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.8 -1.9 N.D. -0.0 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.0 -1.7 N.D. +0.1 +0.1
carbon source Inosine (C) -3.7 -1.4 N.D. -0.0 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.4 -1.3 N.D. -0.2 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.0 -1.9 N.D. -0.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.9 -2.3 N.D. -0.0 +0.2
carbon source Inosine (C) -3.8 -1.3 N.D. +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.9 -0.6 N.D. -0.1 -0.2
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -4.2 -0.4 N.D. -0.1 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.4 -1.0 N.D. -0.3 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.6 -0.8 N.D. -0.0 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.8 -0.6 N.D. -0.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.2 -0.7 N.D. -0.1 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.1 -0.5 N.D. -0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.4 -0.7 N.D. +0.3 -0.8
carbon source D-Xylose (C) -4.3 -0.4 N.D. +0.2 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.9 -0.8 N.D. +0.1 +0.2
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM -4.0 -0.6 N.D. -0.0 +0.1
carbon source L-Lactate (C) -3.9 -0.6 N.D. +0.1 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.5 -0.5 N.D. +0.2 -0.4
carbon source D-Trehalose (C) -4.2 -0.3 N.D. +0.2 +0.0
stress RCH2_defined_glucose_5mM with caffeic 1 mM -3.5 -0.9 N.D. +0.3 +0.1
stress M9 with 3-methyl-2-butenol 2 g/L -3.2 -1.4 N.D. +0.2 +0.7
stress M9 with 3-methyl-2-butenol 2 g/L -3.2 -1.4 N.D. +0.3 +0.7
stress M9 with 3-methyl-2-butenol 2 g/L -3.0 -1.6 N.D. +0.4 +0.8
carbon source D-Ribose (C) -4.2 +0.9 N.D. -0.1 -0.0
stress M9 with 3-methyl-2-butenol 2 g/L -3.2 -1.3 N.D. +0.4 +0.8
carbon source Beta-Lactose (C) -4.0 +0.7 N.D. +0.0 +0.1
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