Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_003244	ABIE53_003245	ABIE53_003246	ABIE53_003247	ABIE53_003248
carbon source	D-Serine (C)	-1.7	-0.2	-0.0	N.D.	N.D.
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	-0.7	-0.1	-0.9	N.D.	N.D.
soil extract	caffeic 5 mM in soil extract	-1.2	-0.0	-0.4	N.D.	N.D.
carbon source	4-Hydroxybenzoic Acid (C)	-0.9	-0.2	-0.4	N.D.	N.D.
plant outgrowth control	Plant outgrowth control	-1.6	+0.0	+0.0	N.D.	N.D.
carbon source	D,L-Malic Acid (C)	-1.2	-0.1	-0.2	N.D.	N.D.
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-1.4	+0.2	-0.3	N.D.	N.D.
soil extract	Chlorogenic 5 mM in soil extract	-0.9	-0.3	-0.2	N.D.	N.D.
carbon source	D-Gluconic Acid (C)	-0.8	+0.0	-0.6	N.D.	N.D.
carbon source	Tween 20 (C)	-0.6	-0.2	-0.7	N.D.	N.D.
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.0	+0.2	-0.6	N.D.	N.D.
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.5	+0.2	-0.0	N.D.	N.D.
carbon source	Pectin 10 g/L (C)	-1.2	-0.0	-0.2	N.D.	N.D.
stress	RCH2_defined_glucose_5mM with Chlorogenic 1 mM	-0.8	-0.1	-0.5	N.D.	N.D.
carbon source	Trisodium citrate (C)	-1.2	-0.0	-0.1	N.D.	N.D.
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	-0.8	+0.2	-0.7	N.D.	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.4	-0.2	+0.2	N.D.	N.D.
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	-0.9	+0.2	-0.6	N.D.	N.D.
nitrogen source	Ammonium chloride 0.5 mM (N)	-1.0	+0.1	-0.4	N.D.	N.D.
stress	RCH2_defined_glucose_5mM with Abietic Acid 5 mM	-1.2	+0.2	-0.2	N.D.	N.D.
mixed community	Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia	-1.2	+0.1	-0.1	N.D.	N.D.
carbon source	D,L-Malic Acid (C)	-1.5	-0.0	+0.4	N.D.	N.D.
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.6	+0.2	+0.3	N.D.	N.D.
carbon source	D-Glucose (C)	-0.9	+0.3	-0.3	N.D.	N.D.
carbon source	butyrate (C)	-1.0	-0.0	+0.3	N.D.	N.D.
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	-0.2	+0.5	N.D.	N.D.
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	+0.2	+1.0	N.D.	N.D.
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.0	+0.2	-0.2	N.D.	N.D.
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.1	-0.2	+0.2	N.D.	N.D.
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.5	+0.1	-0.3	N.D.	N.D.