Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003231 and ABIE53_003232 are separated by 60 nucleotidesABIE53_003232 and ABIE53_003233 are separated by 17 nucleotidesABIE53_003233 and ABIE53_003234 are separated by 220 nucleotidesABIE53_003234 and ABIE53_003235 overlap by 8 nucleotides ABIE53_003231: ABIE53_003231 - DNA-directed RNA polymerase subunit omega, at 3,651,813 to 3,652,016 _003231 ABIE53_003232: ABIE53_003232 - guanylate kinase, at 3,652,077 to 3,652,760 _003232 ABIE53_003233: ABIE53_003233 - uncharacterized protein (TIGR00255 family), at 3,652,778 to 3,653,701 _003233 ABIE53_003234: ABIE53_003234 - ribonuclease PH, at 3,653,922 to 3,654,662 _003234 ABIE53_003235: ABIE53_003235 - XTP/dITP diphosphohydrolase, at 3,654,655 to 3,655,302 _003235
Group Condition ABIE53_003231 ABIE53_003232 ABIE53_003233 ABIE53_003234 ABIE53_003235
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -4.2 N.D. -0.8 -0.8 -0.2
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -4.0 N.D. -0.4 -0.7 -0.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM -3.8 N.D. -1.2 -0.1 -0.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM -3.8 N.D. -1.3 +0.1 -0.4
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM -4.0 N.D. -0.9 -0.1 -0.2
carbon source Azelaic 20 mM (C) -2.8 N.D. -0.8 -1.5 +0.1
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM -4.1 N.D. -0.6 +0.1 -0.5
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -4.3 N.D. -0.8 +0.3 -0.2
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -3.8 N.D. +0.1 -1.0 -0.3
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -3.9 N.D. +0.7 -0.9 -0.4
carbon source Indole-3-pyruvic and Ethanols -4.5 N.D. -0.2 +0.4 +0.2
plant outgrowth control Plant outgrowth control -4.7 N.D. +0.2 +0.5 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.8 N.D. +0.2 +0.4 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.8 N.D. +0.7 -0.8 -0.1
carbon source butyrate (C) -3.6 N.D. -0.7 +0.8 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 N.D. +1.0 -0.8 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -4.4 N.D. +0.6 +0.8 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.9 N.D. +0.2 +1.6 -0.5
carbon source 4-Hydroxybenzoic Acid (C) -3.6 N.D. +0.6 +1.2 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -4.1 N.D. +1.0 +1.8 -0.5
carbon source 4-Hydroxybenzoic Acid (C) -3.6 N.D. +0.5 +1.7 +0.0
soil extract Indole-3-pyruvic 5 mM in soil extract -3.8 N.D. +0.5 +3.0 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.6 N.D. +1.4 +1.9 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 N.D. +1.4 +1.0 -0.4
soil extract Indole-3-pyruvic 5 mM in soil extract -2.7 N.D. -0.0 +2.7 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.2 N.D. +1.7 +1.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 N.D. +3.0 +0.3 -0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.1 N.D. +2.9 +0.5 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.3 N.D. +2.1 +2.1 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 N.D. +2.8 +0.6 -0.6
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