Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_003162	ABIE53_003163	ABIE53_003164	ABIE53_003165	ABIE53_003166
plant outgrowth control	Plant outgrowth control	-4.7	N.D.	-3.3	-0.0	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.5	N.D.	-2.6	-0.2	-0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.6	N.D.	-2.6	-0.2	-0.4
stress	R2A with Tricalcium phosphate 0.5 g/L	-6.2	N.D.	-0.8	+0.0	+0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.4	N.D.	-2.7	-0.3	-0.3
carbon source	Laminarin 10 g/L (C)	-5.7	N.D.	-0.9	+0.1	+0.1
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-4.3	N.D.	-2.6	-0.2	+0.8
r2a outgrowth control	R2A outgrowth control	-3.2	N.D.	-2.5	-0.2	-0.4
carbon source	Shikimic Acid 5 mM (C)	-5.2	N.D.	-0.7	-0.1	-0.2
carbon source	Acetylated xylan 10 g/L (C)	-5.1	N.D.	-0.7	+0.1	-0.4
stress	R2A with Tricalcium phosphate 0.5 g/L	-6.1	N.D.	-0.5	+0.3	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-4.0	N.D.	-2.0	-0.0	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.5	N.D.	-2.5	+0.2	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-4.2	N.D.	-1.9	-0.2	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-4.2	N.D.	-2.0	-0.2	+0.4
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.7	N.D.	-1.8	-0.3	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-4.3	N.D.	-1.8	-0.2	+0.5
carbon source	Shikimic Acid 5 mM (C)	-5.2	N.D.	-0.6	+0.1	-0.1
r2a outgrowth control	R2A outgrowth control	-4.9	N.D.	-0.7	-0.1	-0.0
phage	Burk2_10	-3.1	N.D.	-2.2	+0.2	-0.5
stress	Growth in presence of pinene	-3.2	N.D.	-2.5	-0.0	+0.0
pH	R2A pH 8.3	-3.9	N.D.	-1.3	-0.1	-0.3
r2a outgrowth control	R2A outgrowth control	-3.3	N.D.	-1.8	-0.1	-0.3
r2a outgrowth control	R2A outgrowth control	-3.8	N.D.	-1.8	+0.1	-0.0
r2a outgrowth control	R2A outgrowth control	-3.7	N.D.	-1.8	-0.0	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-4.3	N.D.	-1.1	-0.1	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-4.2	N.D.	-1.1	-0.1	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-4.2	N.D.	-1.0	-0.0	+0.4
soil extract	2,3-dihydroxybenzoic 5 mM in soil extract	-4.8	N.D.	+0.5	+0.1	+0.4
soil extract	Indole-3-pyruvic 5 mM in soil extract	-4.0	N.D.	+1.9	+0.1	+0.2