Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003135 and ABIE53_003136 are separated by 21 nucleotidesABIE53_003136 and ABIE53_003137 are separated by 237 nucleotidesABIE53_003137 and ABIE53_003138 are separated by 15 nucleotidesABIE53_003138 and ABIE53_003139 overlap by 11 nucleotides ABIE53_003135: ABIE53_003135 - electron transfer flavoprotein alpha subunit, at 3,547,487 to 3,548,422 _003135 ABIE53_003136: ABIE53_003136 - electron transfer flavoprotein beta subunit, at 3,548,444 to 3,549,193 _003136 ABIE53_003137: ABIE53_003137 - D-methionine transport system substrate-binding protein, at 3,549,431 to 3,550,228 _003137 ABIE53_003138: ABIE53_003138 - D-methionine transport system permease protein, at 3,550,244 to 3,550,897 _003138 ABIE53_003139: ABIE53_003139 - D-methionine transport system ATP-binding protein, at 3,550,887 to 3,551,921 _003139
Group Condition ABIE53_003135 ABIE53_003136 ABIE53_003137 ABIE53_003138 ABIE53_003139
phage Burk2_1 N.D. N.D. -0.1 -2.6 N.D.
phage Burk2_1 N.D. N.D. -0.0 -2.5 N.D.
phage Burk1_10 N.D. N.D. -0.1 -2.0 N.D.
phage Burk1_100 N.D. N.D. -0.1 -1.9 N.D.
phage Burk2_10 N.D. N.D. -0.0 -2.0 N.D.
phage Burk1_1 N.D. N.D. +0.1 -2.1 N.D.
phage Burk2_10 N.D. N.D. -0.1 -1.9 N.D.
phage Burk1_100 N.D. N.D. +0.2 -2.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.0 -1.8 N.D.
phage NP N.D. N.D. -0.2 -1.4 N.D.
phage Burk1_10 N.D. N.D. +0.1 -1.7 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.1 -1.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.2 -1.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.2 -1.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.1 -1.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.3 -0.8 N.D.
phage Burk1_1 N.D. N.D. +0.0 -1.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.5 -1.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.1 -0.9 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. +0.1 -0.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.2 -0.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.2 -0.9 N.D.
carbon source D-Mannose (C) N.D. N.D. +0.4 -1.0 N.D.
carbon source L-Serine (C) N.D. N.D. +0.2 -0.9 N.D.
r2a outgrowth control R2A outgrowth control N.D. N.D. +0.2 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.2 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. +0.2 -0.8 N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. -0.2 +0.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.1 +0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.3 +0.6 N.D.
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