Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_003128	ABIE53_003129	ABIE53_003130	ABIE53_003131	ABIE53_003132
carbon source	D-Alanine (C)	N.D.	-0.1	+0.0	+0.0	-4.9
carbon source	D-Alanine (C)	N.D.	-0.0	+0.1	-0.1	-4.8
carbon source	L-Alanine (C)	N.D.	-0.0	-0.1	+0.0	-4.4
carbon source	L-Alanine (C)	N.D.	+0.0	+0.1	-0.0	-4.4
carbon source	L-Tryptophan (C)	N.D.	-0.1	-0.2	+0.0	-2.8
carbon source	L-Tryptophan (C)	N.D.	+0.0	+0.3	+0.1	-3.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.1	-1.3	-0.1	-0.1
r2a outgrowth control	R2A outgrowth control	N.D.	-0.0	-0.5	-0.1	-0.7
stress	R2A with 3-methyl-3-butenol 4.5 g/L	N.D.	+0.0	-1.3	-0.0	+0.0
stress	R2A with 3-methyl-3-butenol 4.5 g/L	N.D.	-0.0	-1.3	+0.0	+0.0
r2a outgrowth control	R2A outgrowth control	N.D.	+0.0	-0.5	-0.1	-0.7
stress	R2A with 3-methyl-3-butenol 4.5 g/L	N.D.	+0.0	-1.2	-0.0	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	+0.1	-0.8	+0.2	-0.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.1	-0.6	+0.2	-0.3
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.1	+0.1	-0.2	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.0	+0.4	-0.3	-0.8
carbon source	Epiandrosterone and Ethanols	N.D.	-0.0	+0.5	-0.1	-0.6
carbon source	homovanillyl alcohol and Ethanols	N.D.	+0.0	+0.5	-0.0	-0.6
carbon source	homovanillyl alcohol and Ethanols	N.D.	+0.0	+0.6	-0.1	-0.6
carbon source	homovanillyl alcohol and Ethanols	N.D.	+0.0	+0.6	-0.1	-0.6
carbon source	Cinnamic and Ethanols	N.D.	-0.0	+0.9	-0.2	-0.6
plant outgrowth control	Plant outgrowth control	N.D.	+0.2	+0.6	-0.2	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.0	+0.7	+0.2	-0.6
plant outgrowth control	Plant outgrowth control	N.D.	+0.2	+0.9	-0.3	-0.7
carbon source	2,3-dihydroxybenzoic and Ethanols	N.D.	+0.1	+0.6	+0.0	-0.6
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.3	+0.5	+0.1	-0.5
carbon source	Cinnamic and Ethanols	N.D.	+0.1	+1.1	+0.0	-0.6
stress	M9 with 3-methyl-2-butenol 2 g/L	N.D.	-0.1	-0.2	+0.2	+0.7
carbon source	Acetylated xylan 10 g/L (C)	N.D.	+0.3	+1.2	-0.1	-0.2
carbon source	Acetylated xylan 10 g/L (C)	N.D.	+0.2	+1.0	-0.0	-0.0