Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003085 and ABIE53_003086 are separated by 269 nucleotidesABIE53_003086 and ABIE53_003087 are separated by 37 nucleotidesABIE53_003087 and ABIE53_003088 overlap by 1 nucleotidesABIE53_003088 and ABIE53_003089 are separated by 242 nucleotides ABIE53_003085: ABIE53_003085 - acyl-CoA hydrolase, at 3,484,025 to 3,484,531 _003085 ABIE53_003086: ABIE53_003086 - hypothetical protein, at 3,484,801 to 3,484,959 _003086 ABIE53_003087: ABIE53_003087 - transcriptional regulator GlxA family with amidase domain, at 3,484,997 to 3,486,403 _003087 ABIE53_003088: ABIE53_003088 - MFS family permease, at 3,486,403 to 3,487,686 _003088 ABIE53_003089: ABIE53_003089 - ABC-type glycerol-3-phosphate transport system substrate-binding protein, at 3,487,929 to 3,488,066 _003089
Group Condition ABIE53_003085 ABIE53_003086 ABIE53_003087 ABIE53_003088 ABIE53_003089
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 N.D. -0.9 +0.1 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 N.D. +0.2 +0.2 -0.2
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM -2.3 N.D. +0.5 -0.1 -0.0
carbon source casaminos (C) -1.7 N.D. -0.2 +0.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.3 N.D. -0.8 -0.0 +0.3
soil extract Indole-3-pyruvic 5 mM in soil extract -1.0 N.D. -0.5 +0.0 -0.4
soil extract Sucrose 5 mM in soil extract -1.4 N.D. -0.4 +0.0 +0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.3 N.D. +0.2 -0.3 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 N.D. +0.4 +0.4 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 N.D. -0.3 +0.3 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 N.D. +0.5 +0.2 -0.2
carbon source D-Mannose (C) -1.1 N.D. +0.7 -0.3 -0.5
carbon source L-Tryptophan (C) -1.5 N.D. +0.5 +0.1 -0.1
plant outgrowth control Plant outgrowth control -1.5 N.D. +0.1 +0.3 -0.0
stress R2A with Tricalcium phosphate 0.5 g/L -1.4 N.D. -0.0 +0.1 +0.3
carbon source D-Glucose-6-Phosphate (C) -1.3 N.D. +0.5 -0.0 +0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.9 N.D. -0.1 +1.0 +0.2
carbon source L-Fucose (C) -1.3 N.D. +0.2 +0.1 +0.2
stress RCH2_defined_glucose_5mM with Abietic Acid 5 mM -1.0 N.D. +0.3 +0.3 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 N.D. +0.4 -0.0 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 N.D. +0.4 +0.3 -0.6
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.7 N.D. +0.5 +0.3 -0.4
carbon source Tween 20 (C) +0.6 N.D. +0.5 -0.3 -0.8
r2a outgrowth control R2A outgrowth control -0.6 N.D. -0.3 +0.5 +0.5
carbon source L-Proline (C) +0.7 N.D. +0.7 +0.0 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.2 N.D. +0.3 -0.1 -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +2.0 N.D. -0.1 +0.1 -0.4
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +1.2 N.D. +0.5 +0.3 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 N.D. +0.5 +0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 N.D. +0.9 +0.3 -0.0
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