Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003063 and ABIE53_003064 overlap by 4 nucleotidesABIE53_003064 and ABIE53_003065 overlap by 72 nucleotidesABIE53_003065 and ABIE53_003066 overlap by 4 nucleotidesABIE53_003066 and ABIE53_003067 are separated by 54 nucleotides ABIE53_003063: ABIE53_003063 - ABC-type transport system involved in cytochrome bd biosynthesis fused ATPase/permease subunit, at 3,461,419 to 3,461,694 _003063 ABIE53_003064: ABIE53_003064 - hypothetical protein, at 3,461,691 to 3,461,873 _003064 ABIE53_003065: ABIE53_003065 - DNA recombination protein RmuC, at 3,461,802 to 3,463,280 _003065 ABIE53_003066: ABIE53_003066 - gluconate 2-dehydrogenase, at 3,463,277 to 3,464,266 _003066 ABIE53_003067: ABIE53_003067 - Na+/H+ antiporter NhaD/arsenite permease-like protein, at 3,464,321 to 3,465,751 _003067
Group Condition ABIE53_003063 ABIE53_003064 ABIE53_003065 ABIE53_003066 ABIE53_003067
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -3.4 N.D. -0.2 -0.0 N.D.
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -3.5 N.D. +0.0 +0.1 N.D.
stress RCH2_defined_glucose_5mM with Salicylic 5 mM -3.5 N.D. +0.1 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 N.D. +0.2 +0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.6 N.D. +0.0 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 N.D. -0.4 -0.1 N.D.
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM -2.0 N.D. -0.0 -0.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 N.D. -0.4 -0.7 N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -1.8 N.D. -0.2 +0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 N.D. -0.1 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.8 N.D. +0.3 +0.7 N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -1.5 N.D. -0.2 -0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 N.D. +0.1 -1.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 N.D. +0.2 -0.1 N.D.
stress R2A with Tricalcium phosphate 0.5 g/L -1.6 N.D. -0.2 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 N.D. +0.1 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 N.D. +0.2 +0.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 N.D. +0.1 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 N.D. -0.5 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 N.D. +0.4 +0.3 N.D.
carbon source homovanillyl alcohol and Ethanols -1.5 N.D. +0.2 +0.1 N.D.
carbon source Shikimic Acid 5 mM (C) -1.5 N.D. +0.1 +0.3 N.D.
carbon source Laminarin 10 g/L (C) -1.5 N.D. +0.1 +0.3 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 N.D. +0.3 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 N.D. +0.3 +0.3 N.D.
carbon source Acetylated xylan 10 g/L (C) -1.4 N.D. +0.2 +0.3 N.D.
stress M9 with 3-methyl-2-butenol 2 g/L +1.8 N.D. -0.2 -0.0 N.D.
carbon source m-Inositol (C) +1.2 N.D. +0.2 +0.5 N.D.
stress M9 with 3-methyl-2-butenol 2 g/L +1.9 N.D. +0.0 +0.1 N.D.
stress M9 with 3-methyl-2-butenol 2 g/L +2.0 N.D. +0.3 +0.2 N.D.
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