Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003028 and ABIE53_003029 are separated by 56 nucleotidesABIE53_003029 and ABIE53_003030 are separated by 356 nucleotidesABIE53_003030 and ABIE53_003031 are separated by 73 nucleotidesABIE53_003031 and ABIE53_003032 are separated by 66 nucleotides ABIE53_003028: ABIE53_003028 - hypothetical protein, at 3,426,690 to 3,426,875 _003028 ABIE53_003029: ABIE53_003029 - uncharacterized protein YjbJ (UPF0337 family), at 3,426,932 to 3,427,138 _003029 ABIE53_003030: ABIE53_003030 - two-component system response regulator HydG, at 3,427,495 to 3,428,877 _003030 ABIE53_003031: ABIE53_003031 - beta-N-acetylhexosaminidase, at 3,428,951 to 3,429,979 _003031 ABIE53_003032: ABIE53_003032 - holo-[acyl-carrier protein] synthase, at 3,430,046 to 3,430,462 _003032
Group Condition ABIE53_003028 ABIE53_003029 ABIE53_003030 ABIE53_003031 ABIE53_003032
soil extract 2,3-dihydroxybenzoic 5 mM in soil extract -0.1 -3.4 +0.1 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -3.7 +0.3 -0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -2.6 +0.3 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -3.8 +0.5 +0.1 N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -2.2 +0.9 +0.1 N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.2 +1.8 +1.0 -0.6 N.D.
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM +0.3 +1.7 +1.4 -0.3 N.D.
carbon source L-Proline (C) +0.5 +1.5 +1.3 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 +2.4 +0.8 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +1.7 +1.7 -0.0 N.D.
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.5 +1.4 +2.1 -0.4 N.D.
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.5 +1.2 +2.3 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +2.3 +1.4 -0.3 N.D.
stress RCH2_defined_glucose_5mM with Adenine 5 mM +0.0 +2.1 +1.8 +0.0 N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.5 +1.6 +2.0 -0.1 N.D.
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.4 +1.5 +2.3 -0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +2.8 +1.5 -0.5 N.D.
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.0 +2.4 +2.3 -0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +2.1 +2.3 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +2.5 +1.6 -0.1 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 +3.3 +0.7 -0.3 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +2.4 +2.4 -0.5 N.D.
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.5 +2.5 +2.1 -0.2 N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.3 +2.4 +2.4 -0.2 N.D.
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.3 +2.7 +2.0 +0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +3.4 +1.6 -0.2 N.D.
carbon source Tween 20 (C) +0.6 +2.6 +2.8 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +3.5 +1.7 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +3.7 +1.9 -0.3 N.D.
carbon source Tween 20 (C) +0.6 +3.5 +2.7 -0.0 N.D.
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