Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003019 and ABIE53_003020 are separated by 18 nucleotidesABIE53_003020 and ABIE53_003021 are separated by 138 nucleotidesABIE53_003021 and ABIE53_003022 are separated by 136 nucleotidesABIE53_003022 and ABIE53_003023 are separated by 186 nucleotides ABIE53_003019: ABIE53_003019 - copper(I)-binding protein, at 3,416,501 to 3,416,989 _003019 ABIE53_003020: ABIE53_003020 - putative membrane protein, at 3,417,008 to 3,417,919 _003020 ABIE53_003021: ABIE53_003021 - ElaA protein, at 3,418,058 to 3,418,582 _003021 ABIE53_003022: ABIE53_003022 - diguanylate cyclase (GGDEF)-like protein, at 3,418,719 to 3,419,699 _003022 ABIE53_003023: ABIE53_003023 - uncharacterized protein YbaP (TraB family), at 3,419,886 to 3,420,644 _003023
Group Condition ABIE53_003019 ABIE53_003020 ABIE53_003021 ABIE53_003022 ABIE53_003023
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.7 -0.2 -0.5 -0.1 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.8 -2.0 -0.6 +0.1 +0.3
stress R2A with 3-methyl-3-butenol 4.5 g/L -2.5 -0.2 -0.3 -0.1 -0.2
plant outgrowth control Plant outgrowth control -3.1 +0.1 -0.0 -0.2 -0.1
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM -2.9 -0.0 +0.1 -0.0 -0.4
stress RCH2_defined_glucose_5mM with Serotonin 5 mM -3.2 -0.1 -0.2 +0.3 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 -1.6 -0.2 +0.7 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.9 -1.4 -0.2 +0.7 -0.3
nitrogen source histamine 5mM N source -3.3 -0.2 -0.3 +0.4 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.9 -0.2 +0.5 +0.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.4 -0.1 -0.1 +0.9 -0.2
carbon source 4-Hydroxybenzoic Acid (C) -2.8 -0.2 -0.4 +0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.6 -0.1 +0.3 -0.1 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.4 +0.1 +0.0 +0.5 -0.2
stress R2A with 3-methyl-3-butenol 4.5 g/L -2.7 -0.2 -0.3 +0.2 -0.1
m9 no stress control M9 no stress control -2.6 +0.2 -0.1 -0.1 -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.7 -0.5 +0.9 +0.2 -0.6
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -2.3 -0.1 +0.1 +0.3 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 +0.1 -0.3 +0.5 -0.7
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -2.9 +0.1 -0.1 -0.1 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.3 -0.4 +0.5 +0.6 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.7 +0.0 +0.4 +0.7 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.6 +0.2 -0.2 +0.4 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 -0.5 -0.7 +0.3 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.8 -0.0 +0.2 +0.3 +0.2
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -2.6 +0.3 +0.1 +0.2 +0.2
stress RCH2_defined_glucose_5mM with Ferulic Acid 5 mM -2.5 +0.1 +0.2 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 +0.1 +0.4 -0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 +0.2 +0.0 +0.8 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.1 -0.1 -0.1 +0.9 +0.1
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ABIE53_003019
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ABIE53_003020
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ABIE53_003022
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ABIE53_003023
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