Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002987 and ABIE53_002988 are separated by 149 nucleotidesABIE53_002988 and ABIE53_002989 are separated by 98 nucleotidesABIE53_002989 and ABIE53_002990 are separated by 70 nucleotidesABIE53_002990 and ABIE53_002991 are separated by 26 nucleotides ABIE53_002987: ABIE53_002987 - hypothetical protein, at 3,377,365 to 3,378,282 _002987 ABIE53_002988: ABIE53_002988 - polyphosphate kinase, at 3,378,432 to 3,380,495 _002988 ABIE53_002989: ABIE53_002989 - two-component system phosphate regulon sensor histidine kinase PhoR, at 3,380,594 to 3,381,907 _002989 ABIE53_002990: ABIE53_002990 - two-component system phosphate regulon response regulator PhoB, at 3,381,978 to 3,382,679 _002990 ABIE53_002991: ABIE53_002991 - phosphate transport system protein, at 3,382,706 to 3,383,410 _002991
Group Condition ABIE53_002987 ABIE53_002988 ABIE53_002989 ABIE53_002990 ABIE53_002991
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -3.2 -0.2 -2.3 -3.7 -1.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.6 -0.3 -1.8 -3.7 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.0 -0.2 -1.8 -2.8 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.2 -0.3 -2.0 -2.2 -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 -0.5 -1.6 -1.8 -2.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.0 -0.4 -1.6 -1.4 -1.8
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 -4.9 -0.2 -0.1 -0.2 -0.1
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -4.5 -0.2 -0.1 -0.5 -0.1
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -4.7 -0.3 +0.5 -0.0 -0.7
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -4.5 -0.4 +0.0 -0.3 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 +0.1 -0.5 -1.8 -1.8
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -4.5 -0.4 +0.4 -0.4 +0.2
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -3.3 -0.2 +0.5 -0.7 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.9 -0.2 -0.2 -0.1 -2.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.1 -0.1 -0.5 -0.1 -0.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 -0.1 -1.2 -1.5 +0.0
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -3.2 -0.0 +0.4 -0.7 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -0.1 -0.8 -0.4 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 +0.2 -0.8 -0.6 -0.8
soil extract Indole-3-pyruvic 5 mM in soil extract -2.4 -0.2 +0.1 -0.4 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.6 +0.1 -0.3 -2.0
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -2.5 -0.2 +0.2 -0.6 +0.0
stress RCH2_defined_glucose_5mM with Serotonin 5 mM -2.9 -0.1 +0.2 +0.2 -0.5
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -2.6 -0.1 +0.3 -0.2 -0.3
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -2.5 -0.3 +0.4 -0.2 -0.1
carbon source D-Lactate (C) -2.0 -0.3 -0.7 +0.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 -0.2 +0.5 +0.3 -1.3
carbon source D-Lactate (C) -1.5 -0.1 -0.9 -0.3 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.3 +0.5 -0.9 +1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 -0.2 +0.1 +1.1 -1.5
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