Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002970 and ABIE53_002971 are separated by 85 nucleotidesABIE53_002971 and ABIE53_002972 are separated by 213 nucleotidesABIE53_002972 and ABIE53_003839 are separated by 192 nucleotidesABIE53_003839 and ABIE53_002973 are separated by 70 nucleotides ABIE53_002970: ABIE53_002970 - hypothetical protein, at 3,362,686 to 3,363,066 _002970 ABIE53_002971: ABIE53_002971 - cytochrome c peroxidase, at 3,363,152 to 3,364,582 _002971 ABIE53_002972: ABIE53_002972 - acid phosphatase, at 3,364,796 to 3,366,373 _002972 ABIE53_003839: ABIE53_003839 - tRNA-Arg, at 3,366,566 to 3,366,642 _003839 ABIE53_002973: ABIE53_002973 - undecaprenyl-diphosphatase, at 3,366,713 to 3,367,543 _002973
Group Condition ABIE53_002970 ABIE53_002971 ABIE53_002972 ABIE53_003839 ABIE53_002973
carbon source Citric Acid (C) -0.1 -0.2 +0.1 N.D. -4.4
carbon source Citric Acid 20 mM (C) -0.2 -0.3 +0.0 N.D. -4.0
carbon source Citric Acid 20 mM (C) -0.0 -0.3 -0.2 N.D. -3.9
carbon source Citric Acid (C) -0.1 -0.1 +0.1 N.D. -3.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.6 -0.2 +0.0 N.D. -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 -0.1 +0.2 N.D. -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 +0.0 -0.1 N.D. -1.7
r2a no shaking R2A no shaking -0.7 -0.3 -0.0 N.D. -0.5
carbon source D,L-Malic Acid (C) -0.6 -0.3 -0.3 N.D. -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.4 +0.2 N.D. -0.3
biofilm biofilm; attached cells from 96 well plate assay in R2A -0.7 +0.1 +0.1 N.D. -0.7
motility_chemotaxis Motility_chemotaxis, R2A; inner cut -1.1 -0.2 -0.0 N.D. +0.1
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM +0.2 -0.3 +0.2 N.D. -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.2 +0.2 N.D. -0.8
carbon source L-Tryptophan (C) +0.5 -0.1 -0.4 N.D. -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.3 +0.6 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.1 -0.1 N.D. +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.2 +0.0 N.D. +1.0
carbon source L-Threonine (C) +0.5 -0.3 -0.3 N.D. +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.4 -0.1 -0.1 N.D. -0.6
motility_chemotaxis Motility_chemotaxis, R2A; outer cut +1.3 -0.1 +0.1 N.D. -0.5
carbon source Tween 20 (C) +1.1 -0.2 -0.2 N.D. +0.3
motility_chemotaxis Motility_chemotaxis, R2A; outer cut +1.7 -0.3 -0.2 N.D. -0.3
carbon source Tween 20 (C) +1.2 -0.2 -0.1 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +2.3 -0.1 -0.4 N.D. -0.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.5 +0.2 -0.3 N.D. +0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.8 +0.1 +0.0 N.D. -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +2.2 +0.1 +0.3 N.D. -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 +0.3 +0.2 N.D. +0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +2.2 +0.3 +0.2 N.D. +0.4
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