Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_002968 and ABIE53_002969 are separated by 67 nucleotidesABIE53_002969 and ABIE53_002970 are separated by 144 nucleotidesABIE53_002970 and ABIE53_002971 are separated by 85 nucleotidesABIE53_002971 and ABIE53_002972 are separated by 213 nucleotides ABIE53_002968: ABIE53_002968 - 8-oxo-dGTP pyrophosphatase MutT (NUDIX family), at 3,361,635 to 3,362,084 _002968 ABIE53_002969: ABIE53_002969 - surface antigen, at 3,362,152 to 3,362,541 _002969 ABIE53_002970: ABIE53_002970 - hypothetical protein, at 3,362,686 to 3,363,066 _002970 ABIE53_002971: ABIE53_002971 - cytochrome c peroxidase, at 3,363,152 to 3,364,582 _002971 ABIE53_002972: ABIE53_002972 - acid phosphatase, at 3,364,796 to 3,366,373 _002972
Group Condition ABIE53_002968 ABIE53_002969 ABIE53_002970 ABIE53_002971 ABIE53_002972
r2a no shaking R2A no shaking -0.2 -0.8 -0.9 -0.3 -0.0
motility_chemotaxis Motility_chemotaxis, R2A; inner cut +0.2 -0.6 -1.1 -0.2 -0.0
r2a no shaking R2A no shaking -0.0 -0.6 -0.7 -0.3 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.3 -0.5 -0.2 -0.3
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut +0.1 -0.8 -0.2 -0.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 +0.4 -0.5 +0.1 -0.1
carbon source Azelaic 20 mM (C) +0.1 -0.9 +0.2 -0.5 -0.1
carbon source L-Fucose (C) -0.5 -0.3 +0.3 -0.3 -0.3
carbon source D-Alanine (C) -0.5 -0.5 +0.5 -0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.5 -0.6 +0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.5 -0.9 -0.4 +0.2
carbon source Acetylated xylan 10 g/L (C) +0.4 -0.7 -0.5 +0.0 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 +0.5 -0.3 +0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.2 +0.5 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 -0.9 +0.8 +0.1 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.5 -0.4 +0.1 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.1 -0.8 +0.3 +0.6
carbon source Tween 20 (C) -0.0 -0.2 +1.1 -0.2 -0.2
plant outgrowth control Plant outgrowth control -0.4 +0.9 -0.1 -0.2 +0.1
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.3 -0.1 +1.7 -0.3 -0.2
carbon source Tween 20 (C) -0.2 +0.2 +1.2 -0.2 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +1.0 +0.0 +0.3 -0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.4 -0.2 +1.8 +0.1 +0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 +0.2 +1.4 -0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.7 +0.4 +0.4 +0.1 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.2 +1.2 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -0.7 +2.2 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 +0.1 +2.3 -0.1 -0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +0.6 +1.5 +0.2 -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.2 +2.2 +0.1 +0.3
remove
ABIE53_002968
plot		 remove
ABIE53_002969
plot		 remove
ABIE53_002970		 remove
ABIE53_002971
plot		 remove
ABIE53_002972
plot