Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002963 and ABIE53_002964 are separated by 254 nucleotidesABIE53_002964 and ABIE53_002965 are separated by 169 nucleotidesABIE53_002965 and ABIE53_002966 are separated by 92 nucleotidesABIE53_002966 and ABIE53_002967 are separated by 563 nucleotides ABIE53_002963: ABIE53_002963 - alanyl-tRNA synthetase, at 3,352,509 to 3,355,181 _002963 ABIE53_002964: ABIE53_002964 - crotonobetainyl-CoA:carnitine CoA-transferase CaiB-like acyl-CoA transferase, at 3,355,436 to 3,356,656 _002964 ABIE53_002965: ABIE53_002965 - putative alpha/beta hydrolase family esterase, at 3,356,826 to 3,357,389 _002965 ABIE53_002966: ABIE53_002966 - gamma-glutamyltranspeptidase/glutathione hydrolase, at 3,357,482 to 3,359,239 _002966 ABIE53_002967: ABIE53_002967 - glutaminyl-tRNA synthetase, at 3,359,803 to 3,361,512 _002967
Group Condition ABIE53_002963 ABIE53_002964 ABIE53_002965 ABIE53_002966 ABIE53_002967
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.2 -1.1 -0.1 N.D.
carbon source D,L-Malic Acid (C) N.D. -0.1 -1.2 -0.0 N.D.
carbon source D-Fructose (C) N.D. +0.0 -1.2 -0.0 N.D.
carbon source Acetylated xylan 10 g/L (C) N.D. -0.2 -0.7 -0.2 N.D.
carbon source D-Gluconic Acid (C) N.D. -0.1 -1.0 +0.0 N.D.
carbon source Acetylated xylan 10 g/L (C) N.D. -0.2 -0.8 +0.0 N.D.
soil extract Serotonin 5 mM in soil extract N.D. -0.0 -0.9 -0.1 N.D.
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. +0.1 -1.1 +0.0 N.D.
carbon source D-Galacturonic Acid (C) N.D. +0.0 -1.1 +0.1 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.2 -1.1 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 -0.9 +0.2 N.D.
carbon source D-Glucose (C) N.D. +0.0 -0.8 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.1 -0.7 +0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.3 +0.4 +0.3 N.D.
stress RCH2_defined_glucose_5mM with Abietic Acid 5 mM N.D. -0.1 +0.9 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.1 +0.7 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.2 +0.9 +0.1 N.D.
stress RCH2_defined_glucose_5mM with Shikimic Acid 5 mM N.D. -0.1 +0.9 +0.0 N.D.
stress control RCH2_defined_glucose_5mM with no stress N.D. -0.1 +0.8 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.1 +0.9 +0.1 N.D.
stress RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM N.D. +0.1 +0.9 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.1 +1.2 +0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 +0.8 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.0 +1.3 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.1 +1.4 +0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.3 +1.6 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.3 +1.7 -0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.2 +1.0 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.2 +1.0 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.0 +1.4 +0.2 N.D.
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