Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_002960 and ABIE53_002961 are separated by 307 nucleotidesABIE53_002961 and ABIE53_002962 are separated by 146 nucleotidesABIE53_002962 and ABIE53_002963 are separated by 235 nucleotidesABIE53_002963 and ABIE53_002964 are separated by 254 nucleotides ABIE53_002960: ABIE53_002960 - threonine aldolase, at 3,348,470 to 3,349,501 _002960 ABIE53_002961: ABIE53_002961 - MFS family permease, at 3,349,809 to 3,351,152 _002961 ABIE53_002962: ABIE53_002962 - DNA-binding transcriptional LysR family regulator, at 3,351,299 to 3,352,273 _002962 ABIE53_002963: ABIE53_002963 - alanyl-tRNA synthetase, at 3,352,509 to 3,355,181 _002963 ABIE53_002964: ABIE53_002964 - crotonobetainyl-CoA:carnitine CoA-transferase CaiB-like acyl-CoA transferase, at 3,355,436 to 3,356,656 _002964
Group Condition ABIE53_002960 ABIE53_002961 ABIE53_002962 ABIE53_002963 ABIE53_002964
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.2 -0.5 N.D. -0.1
carbon source D-Galactose (C) -0.5 -0.0 -0.5 N.D. -0.1
stress R2A with Tricalcium phosphate 0.5 g/L -0.4 +0.1 -0.4 N.D. -0.2
carbon source L-Phenylalanine (C) -0.8 +0.1 -0.3 N.D. +0.1
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.7 -0.2 +0.3 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.4 -0.3 N.D. +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.0 -0.3 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 -0.5 +0.1 N.D. -0.2
stress RCH2_defined_glucose_5mM with Adenine 5 mM +0.6 +0.1 -0.4 N.D. -0.1
carbon source Shikimic Acid 5 mM (C) +0.5 +0.3 -0.3 N.D. -0.1
carbon source Acetylated xylan 10 g/L (C) +0.3 +0.5 -0.2 N.D. -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.2 +0.3 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.0 -0.2 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.7 +0.2 -0.3 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.2 +0.0 -0.5 N.D. -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.2 -0.1 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.8 +0.2 +0.0 N.D. -0.3
carbon source Shikimic Acid 5 mM (C) +0.9 +0.3 -0.2 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 +0.1 -0.3 N.D. -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.2 +0.1 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.0 +0.2 -0.3 N.D. +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +0.2 -0.1 N.D. -0.2
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.8 +0.1 +0.2 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 -0.3 +0.2 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.0 +0.3 +0.1 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.1 +0.5 N.D. +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 -0.0 +0.3 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.2 +0.2 N.D. +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.4 +0.2 N.D. +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.1 +0.3 +0.1 N.D. +0.2
remove
ABIE53_002960
plot		 remove
ABIE53_002961
plot		 remove
ABIE53_002962		 remove
ABIE53_002963
plot		 remove
ABIE53_002964
plot